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BioLiP
>protein
KFIYGDVDGNGSVRSIDAVLIRDYVLGKINEFPYEYGMLAADVDGNGSIKINDAVLVRDYVLGKIFLFPVEEK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4uyp:B 73 73 1.0000 1.0000 1.0000 6.37e-47 4uyp:D, 4uyq:B
2 5nrk:B 68 66 0.4110 0.4412 0.4545 2.23e-12 5nrk:D, 5nrm:B
3 5nrk:B 68 32 0.2603 0.2794 0.5938 7.97e-07 5nrk:D, 5nrm:B
4 8x3a:A 151 72 0.3425 0.1656 0.3472 2.08e-07 8x39:A, 8x39:B
5 8x3a:A 151 60 0.3151 0.1523 0.3833 1.20e-06 8x39:A, 8x39:B
6 4fl4:A 68 66 0.2740 0.2941 0.3030 1.90e-06 4fl4:D, 4fl4:G, 4fl4:J
7 4dh2:B 72 67 0.3288 0.3333 0.3582 5.15e-06 4dh2:D
8 4dh2:B 72 31 0.1644 0.1667 0.3871 1.0 4dh2:D
9 2ccl:B 62 60 0.3014 0.3548 0.3667 7.42e-05 2ccl:D, 1ohz:B
10 5m2o:B 74 68 0.3288 0.3243 0.3529 6.44e-04
11 1daq:A 71 67 0.2877 0.2958 0.3134 8.87e-04 1dav:A, 2mte:A
12 1daq:A 71 33 0.1507 0.1549 0.3333 0.48 1dav:A, 2mte:A
13 5lxv:B 65 70 0.3288 0.3692 0.3429 0.001 5lxv:D
14 3ul4:B 63 61 0.2603 0.3016 0.3115 0.010
15 3pdd:A 190 65 0.3151 0.1211 0.3538 1.2
16 4atq:F 444 42 0.1918 0.0315 0.3333 2.5 4atp:A, 4atp:B, 4atp:C, 4atp:D, 4atp:E, 4atp:F, 4atp:G, 4atp:H, 4atp:I, 4atp:J, 4atp:K, 4atp:L, 4atq:A, 4atq:B, 4atq:C, 4atq:D, 4atq:E, 4atq:G, 4atq:H, 4atq:I, 4atq:J, 4atq:K, 4atq:L
17 7qhm:U 154 22 0.1644 0.0779 0.5455 4.7 7q21:L, 7q21:l, 7qhm:H, 7qho:H, 7qho:U
18 2wop:A 554 30 0.1781 0.0235 0.4333 4.9 2wok:A
19 5n5p:B 87 51 0.2055 0.1724 0.2941 5.8 5n5p:D
20 2oaj:A 875 45 0.2055 0.0171 0.3333 6.3
21 2vn6:B 64 63 0.2055 0.2344 0.2381 6.5 2vn5:B, 2vn5:D
22 6kls:B 395 34 0.1644 0.0304 0.3529 6.7 6kls:E, 6klv:B, 6klv:E
23 1omr:A 201 56 0.2466 0.0896 0.3214 6.8 2het:A, 2het:B, 2het:C, 2het:D, 2i94:A, 1jsa:A, 1la3:A, 4m2o:A, 4m2p:A, 4m2q:A, 4mlw:A, 1omv:A, 1rec:A, 4yi8:A, 4yi9:A
24 1ggz:A 144 52 0.2055 0.1042 0.2885 7.3
25 7pu7:A 1070 28 0.1370 0.0093 0.3571 7.8 5lew:A
26 8rdj:C 1040 69 0.2329 0.0163 0.2464 8.3
27 2rhp:A 622 42 0.1781 0.0209 0.3095 8.3 1yo8:A
28 5in4:A 355 59 0.2740 0.0563 0.3390 8.7 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
29 4kpn:A 318 18 0.1233 0.0283 0.5000 9.3 4kpn:B, 4kpn:C, 4kpn:D, 4kpn:E, 4kpn:F, 4kpn:G, 4kpn:H
30 5i4m:A 414 14 0.1233 0.0217 0.6429 9.4 5i4m:B, 5thw:A, 5thw:B, 5thw:C, 5thw:D
31 7mvz:A 1641 20 0.1096 0.0049 0.4000 9.6 7tbi:F1, 7tbi:F2, 7tbj:F1, 7tbj:F2, 7tbk:F1, 7tbk:F2, 7tbl:F1, 7tbl:F2, 7tbm:F1, 7tbm:F2
32 2gq3:A 720 53 0.2877 0.0292 0.3962 9.8 6apz:A, 6as6:A, 6asu:A, 6au9:A, 6axb:A, 6ba7:A, 6bu1:A, 6c2x:A, 6c6o:A, 5c7v:A, 6c7b:A, 6c8p:A, 5c9r:A, 5c9u:A, 5c9w:A, 5c9x:A, 5cah:A, 5cak:A, 5cbb:A, 5cbi:A, 5cbj:A, 5cc3:A, 5cc5:A, 5cc6:A, 5cc7:A, 5ccz:A, 5cew:A, 5cjm:A, 5cjn:A, 6dko:A, 6dl9:A, 6dlj:A, 6dnp:A, 5drc:A, 5dri:A, 5dx7:A, 5e9x:A, 5ecv:A, 2gq3:B, 5h8m:A, 5h8u:A, 5h8u:B, 1n8i:A, 1n8w:A, 1n8w:B, 3s9i:A, 3s9z:A, 3sad:A, 3saz:A, 3sb0:A, 5t8g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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