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BioLiP
>protein
KETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEI

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2q2k:A 45 44 1.0000 0.9778 1.0000 9.32e-27 2q2k:B
2 5ue8:A 847 32 0.2500 0.0130 0.3438 0.19 5ue8:B, 1y8f:A
3 4v4n:AJ 132 37 0.2955 0.0985 0.3514 1.8 4v6u:BJ
4 6skf:BL 140 45 0.3864 0.1214 0.3778 1.9 6skg:BL, 6th6:BL
5 6edk:A 193 23 0.1818 0.0415 0.3478 2.6 6ci4:A, 6ci5:A
6 5van:A 861 40 0.2955 0.0151 0.3250 3.8 6nfj:A, 6nfj:D, 5vaq:A
7 6lvb:A 762 33 0.2955 0.0171 0.3939 4.7 6lvb:C, 6lvb:E, 6lvb:G, 6lvc:A, 6lvc:C, 6lvv:A, 6lvv:C, 6lvv:E, 6lvv:G, 6lvv:I, 6lvv:K, 6lvv:M, 6lvv:O, 7w8j:A, 7w8j:C, 7w8j:E, 7w8j:G
8 6fop:A 717 24 0.2727 0.0167 0.5000 5.8
9 4hnv:B 1033 19 0.2045 0.0087 0.4737 5.9 8gk8:D
10 3bg5:A 1137 19 0.2045 0.0079 0.4737 6.3 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
11 3ho8:D 934 19 0.2045 0.0096 0.4737 6.5
12 3bg5:B 1074 19 0.2045 0.0084 0.4737 6.5 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
13 3esb:A 199 14 0.2045 0.0452 0.6429 6.6 3ef3:A, 3esa:A, 3esa:B, 3esc:A, 3esd:A, 1oxm:A, 1oxm:B, 1xzc:A, 1xzk:A, 1xzk:B, 1xzl:A, 1xzm:A
14 3mb5:A 255 22 0.1818 0.0314 0.3636 7.3 3lga:A, 3lga:B, 3lga:C, 3lga:D, 3lhd:C, 3lhd:A, 3lhd:B, 3lhd:D
15 6nbp:A 246 23 0.2045 0.0366 0.3913 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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