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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KAPPLVNLAEEKDVKVTVGENMDLKNADLLTDGDKYYLQHDATGNKEGNNWENYQEQGTEVTSTAEGKNGVWVQVDLGAS
YPLEVINLKRQVYDGQATIGNGNPSGQGKRLKGTKISYKNTAIVIGNEEDLSDGQIVYYEGNPTLPDGVKQPENVSKPYE
EAMGGQWFYMDYANKNGLGATELGTTKEARYIRVYTENPKGAAVKFMELGIYGYENEQDVQSQDGPRRVIDNEHPMMIAT
AYSNDVYEIGQEEGPELQGSNTVDGRWNAIPDDLKENNVLLLHTNNLRQFAPDHIGQAYLQAFHEHGLQIAYEQGAPIML
LGLTAAATPENGGTQYNITADMDYGWLDLMYRMYPNMQGVFNTENFWAGIHPPCEGSAKMLEIADRFGGFFVWSDQDHGS
TVTNIVSNANMKKALEKHGDAFYLIYKNTSSNQPDDLKTSSFFQGSWLAGYTGGWGMLSDTWAWDKQFSKLWQGAGSYNN
WQRLCGEPEALLGMQMMSTYLGGGVIYTFEFPEIVYGTSNTNSPANTHVLTELFRYIVNHPAPSKKEIMEETKAVLYGNV
SSDFYSGLSGKPTGFQIYETGRYGIIPVIPTWGTRAEVTKKLIQEADKLGVTPPNVLDVKDKNLSGQAKQKYFKDLYPIE
YVGNAFADKWEGTWYLYNNKVNTNEKQHAILPLEGEEESARLKVEMEPHEFMIMNESGDGTAMDITLNNYRVNKDEIIFD
NKFGLTWTGDFSPGQTTINGKLSVYKYMDEYNVVNAPEGKLSPEDNELRTTTFELTKLAKEPKVQVVKGQQPDTDGQPQY
TEPKVEFNEETGKAVITIQTNGWVDLSITGLEFVYDENAQKIEDEPIKS

The query sequence (length=849) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pmo:G 849 849 1.0000 1.0000 1.0000 0.0 7pmo:D, 7q1w:A, 7q20:A, 7q20:G
2 4d6g:A 587 633 0.2273 0.3288 0.3049 5.91e-85 4d6d:A, 4d6e:A, 4d6f:A, 4d6h:A, 4d6i:A, 4d6j:A, 4d71:A, 4d72:A, 2wmi:A, 2wmi:B, 2wmj:A, 2wmj:B, 2wmk:A, 2wmk:B
3 2wmg:A 553 611 0.2061 0.3165 0.2864 2.68e-67 2wmh:A
4 2gcd:A 309 57 0.0247 0.0680 0.3684 0.83 2gcd:B, 1u5q:A, 1u5q:B, 1u5r:A, 1u5r:B
5 3qb5:K 222 36 0.0200 0.0766 0.4722 0.89
6 2uyy:A 292 48 0.0188 0.0548 0.3333 3.2 2uyy:D
7 3omc:A 217 42 0.0177 0.0691 0.3571 3.7 5m9o:A, 3omc:B, 3omg:A, 3omg:B
8 4dod:A 454 28 0.0141 0.0264 0.4286 4.5 4doe:A
9 3a8t:A 289 36 0.0200 0.0588 0.4722 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218