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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLGLPLVGRVAAGE
IEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVARLKKQGNKVELLPENSE
FKPIVVDLRQQSFTIEGLAVGVIRNGDWL

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3jsp:A 194 194 0.9841 0.9588 0.9588 2.57e-129 3jso:A, 3jso:B, 3jsp:B
2 8b0v:A 124 123 0.4074 0.6210 0.6260 1.09e-47 8b0v:B
3 8uo4:A 292 55 0.0899 0.0582 0.3091 1.9 8uo2:A
4 4z7u:B 169 54 0.0847 0.0947 0.2963 1.9 4gg6:B
5 2i02:A 140 104 0.1534 0.2071 0.2788 2.2 2i02:B
6 3lba:A 260 32 0.0635 0.0462 0.3750 2.3
7 8e6n:A 398 45 0.0847 0.0402 0.3556 2.4 8e60:A, 8e6h:A, 8e6i:A, 8e6l:A
8 6or5:A 2058 40 0.0741 0.0068 0.3500 2.9
9 6o9a:A 271 68 0.1111 0.0775 0.3088 3.1 6o9a:B
10 1yf3:A 259 29 0.0635 0.0463 0.4138 4.7 1q0s:A, 1q0t:A, 1q0t:B, 1yf3:B, 1yfj:A, 1yfj:B, 1yfj:C, 1yfj:D, 1yfj:E, 1yfj:F, 1yfl:A, 1yfl:B, 1yfl:D, 1yfl:E
11 4ft6:A 387 42 0.0688 0.0336 0.3095 4.9
12 8ome:A 298 41 0.0741 0.0470 0.3415 5.0 2hw1:A, 8ome:D, 8ome:B, 8ome:C
13 8ug1:B 305 41 0.0741 0.0459 0.3415 5.3 9fhd:A, 9fhd:B, 9fhe:A, 9fhe:B, 3nbv:A, 3nbv:B, 3nbw:A, 3nbw:B, 3nc2:A, 3nc2:B, 3nc9:A, 3nc9:B, 3nca:A, 8omf:A, 8omf:B, 8omj:A, 8omj:B, 8omk:A, 8omk:B, 3q92:A, 3q92:B, 3qa2:A, 3qa2:B, 3qai:A, 3qai:B, 3ro4:A, 8ug1:A, 8ug3:A, 8ug3:B, 6ul7:A, 6w0n:A, 6w0n:B, 6w0w:A, 6w0w:B, 6w0x:A, 6w0x:B, 6w0y:A, 6w0y:B, 6w0z:A, 6w0z:B, 5wbm:A, 5wbm:B, 5wbo:A, 5wbo:B, 5wbp:A, 5wbq:A, 5wbq:B, 5wbr:A, 5wbr:B, 5wbz:A, 5wbz:B
14 5t0h:V 480 83 0.1376 0.0542 0.3133 6.6 6epe:S, 6epf:S, 5vft:V
15 4v8p:BS 126 38 0.0794 0.1190 0.3947 7.7 4v8p:CS, 4v8p:ES, 4v8p:GS
16 4wei:A 259 72 0.0952 0.0695 0.2500 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218