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BioLiP
>protein
KAERAISLLEKDNKGNYLLTTSQIRKLLSLCSSLYDRSKERKFDELINDVSYLRVQFVYQAGREIAVKDLIEKAQILEAL
KEIKDRETLQRFCRYMEALVAYFKFYGG

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nud:A 108 108 1.0000 1.0000 1.0000 2.77e-74 6nud:B
2 6ifk:D 121 111 0.7315 0.6529 0.7117 2.17e-50 6ifk:C, 6ifl:B, 6ifl:C, 6ifr:D, 6ifr:C, 6ifu:B, 6ifu:C, 6ify:D, 6ify:C, 6ifz:D, 6ifz:C, 6ig0:D, 6ig0:C
3 6xn3:C 139 101 0.3519 0.2734 0.3762 1.55e-19 9ash:D, 9asi:D, 9asi:E, 9asi:C, 6xn3:D, 6xn3:E, 6xn4:C, 6xn4:D, 6xn7:C, 6xn7:D, 6xn7:E
4 7v01:I 117 95 0.2963 0.2735 0.3368 6.47e-13 8do6:C, 8do6:D, 7uzy:I, 7v01:K
5 7uzy:K 59 65 0.1852 0.3390 0.3077 3.71e-06
6 6mur:B 162 96 0.2407 0.1605 0.2708 8.88e-05 6mus:B, 6o7e:B, 6o7h:B, 6o7i:B
7 6mus:J 121 93 0.2315 0.2066 0.2688 0.004
8 8xmn:A 1277 65 0.1759 0.0149 0.2923 1.1 8i5b:A, 8i5g:A, 8i5x:A, 8i5y:A, 8j4f:A, 8s9b:A, 8s9c:A, 8thg:A, 8thh:A, 7xve:A, 7xvf:A
9 8x6f:D 1176 47 0.1667 0.0153 0.3830 3.0 8x6g:D
10 4i9b:A 496 46 0.1296 0.0282 0.3043 6.1 4i8q:A, 4i9b:B
11 1a3w:A 492 49 0.1481 0.0325 0.3265 7.0 1a3w:B, 1a3x:A, 1a3x:B
12 7ar9:n 120 30 0.1019 0.0917 0.3667 9.6 7ard:n

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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