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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IVDLRGMWVGVAGLNIFYLIVRIYEQIYGWRAGLDSFAPEFQTYWLSILWTEIPLELVSGLALAGWLWKTRDRNVDAVAP
REELRRHVVLVEWLVVYAVAIYWGASFFTEQDGTWHMTVIRDTDFTPSHIIEFYMSYPIYSIMAVGAFFYAKTRIPYFA

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3chx:C 159 159 1.0000 1.0000 1.0000 5.45e-115 3chx:G, 3chx:K
2 4pi0:C 217 159 0.8805 0.6452 0.8805 4.85e-98 4phz:C, 4phz:G, 4phz:K, 4pi0:G, 4pi0:K, 3rfr:C, 3rfr:G, 3rfr:K
3 7s4m:K 241 159 0.8805 0.5809 0.8805 5.12e-97 4pi2:C, 4pi2:G, 4pi2:K, 7s4m:G, 7s4m:C
4 1yew:C 188 159 0.6415 0.5426 0.6415 2.17e-71 1yew:G, 1yew:K
5 3rgb:C 213 159 0.6415 0.4789 0.6415 4.27e-71 3rgb:K, 3rgb:G
6 8oyi:C 236 159 0.6415 0.4322 0.6415 1.45e-70 8oyi:G, 8oyi:K, 7s4h:C, 7s4h:G, 7s4h:K, 7s4i:C, 7s4i:G, 7s4i:K, 7s4j:C, 7s4j:G, 7s4j:K, 7s4k:C, 7s4k:G, 7s4k:K, 8sqw:C, 8sqw:G, 8sqw:K, 8sr1:C, 8sr1:G, 8sr1:K, 8sr2:C, 8sr2:G, 8sr2:K, 8sr4:C, 8sr4:G, 8sr4:K, 7t4p:C, 7t4p:G, 7t4p:K
7 7s4l:C 231 141 0.5535 0.3810 0.6241 1.21e-62 7s4l:H, 7s4l:I
8 6cxh:C 101 36 0.1195 0.1881 0.5278 3.69e-06
9 7kgg:C 1020 58 0.1195 0.0186 0.3276 0.53 7kgh:C, 7kgi:A, 7kgi:C
10 8ee7:A 456 77 0.1195 0.0417 0.2468 1.2 8ee4:A, 8ee4:B, 8ee4:C, 8ee4:D, 8ee4:E, 8ee4:F, 8ee7:B, 8eea:A, 8eea:B, 8eea:C, 8eea:D, 8eea:E, 8eea:F, 8sux:A, 8sux:B, 8sux:C, 8sux:D, 8sux:E, 8sux:F
11 3sp4:B 204 41 0.1006 0.0784 0.3902 5.3 3sp4:A, 3spd:A, 3spd:B, 3spd:C, 3spd:D, 3spl:A, 3spl:B, 3spl:C, 3spl:D, 3szq:A, 4xba:A, 4xba:B, 4ykl:B
12 8r3p:A 672 32 0.0755 0.0179 0.3750 9.8 8r3p:B, 8r3p:C, 8r3p:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218