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BioLiP
>protein
ITAISLCPPGCKPGALMGCNMKPAPCNCSIHVSK

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1wco:N 34 34 1.0000 1.0000 1.0000 1.25e-18
2 8c0v:B 1030 24 0.2941 0.0097 0.4167 1.3 8c0v:D, 8c0v:F, 8c0w:A, 8c0w:C, 8c0w:E, 8u0v:D, 8u0v:F, 8u0v:B
3 6bxo:A 321 21 0.2353 0.0249 0.3810 2.1 6bxm:A, 6bxm:B, 6bxn:B, 6bxo:B
4 8tdi:G 386 17 0.2647 0.0233 0.5294 3.1 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
5 8om2:G 203 19 0.2647 0.0443 0.4737 10.0 8d8k:G, 8d8l:G, 5mrc:GG, 5mre:GG, 5mrf:GG, 8om3:G, 8om4:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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