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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ISTGVFDHLPFQHRRQHAFNTLPLHDANHFGGRTAYLREIGPVNIKKSGRRFKKDLRTVQFNVDIWCAQQTLRKRWKQRD
WEVIEVPFRLAPAEQQRVIPEMYTDVPPMTDPERHDFSNIRNKVYDREELQGVLFGASGPLPYPPLQRIDRQAMTLDKFL

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aor:aw 160 160 1.0000 1.0000 1.0000 1.19e-119
2 6hiv:DV 160 160 0.8250 0.8250 0.8250 4.74e-99 6hiw:DV, 6hiz:DV, 7pua:DV, 7pub:DV, 6sg9:DV, 6sgb:DV
3 7ane:aw 139 139 0.5938 0.6835 0.6835 9.92e-71
4 6pd0:A 366 19 0.0688 0.0301 0.5789 1.4 6pcz:A, 6pcz:B, 6pd0:B
5 5olt:A 383 19 0.0750 0.0313 0.6316 1.5 5ojh:A
6 8quc:A 395 69 0.1250 0.0506 0.2899 2.5 8f1c:A, 8f1c:B, 8f1c:C, 8f1c:D, 8f1d:A, 8f1d:B, 8f1d:C, 8f1d:D, 7phi:C, 7phi:B, 7phi:D, 8quc:B, 8quc:D, 8quc:C, 8qud:A, 8qud:B, 8qud:C, 8qud:D
7 5ctn:A 233 60 0.0938 0.0644 0.2500 3.3 5ctn:B
8 8iau:H 412 94 0.1625 0.0631 0.2766 3.6
9 8iav:A 451 94 0.1625 0.0576 0.2766 3.7 8iav:B
10 4rn7:A 186 23 0.0625 0.0538 0.4348 3.9
11 8iav:C 460 94 0.1625 0.0565 0.2766 3.9 8iav:D
12 8dmu:A 476 54 0.1062 0.0357 0.3148 4.0 8dmu:B, 8dmu:C, 8dmu:D
13 8iat:A 501 94 0.1625 0.0519 0.2766 9.0 8iat:B, 8iat:C, 8iat:D, 8iau:A, 8iau:B, 8iau:C, 8iau:D, 8iau:E, 8iau:F, 8iau:G, 8iaw:A, 8iaw:B, 8iax:A, 8iax:B, 8iax:C, 8iax:D, 8iax:E, 8iax:F, 8iax:G, 8iax:H, 8xw6:A, 8xw6:B, 8xw7:A, 8xw7:B, 8xw8:A, 8xw8:B, 8xw8:C, 8xw8:D, 8xw9:A, 8xw9:B, 8zly:A, 8zly:B, 8zly:C, 8zly:D, 8zly:E, 8zly:F, 8zly:G, 8zly:H
14 351c:A 82 25 0.0688 0.1341 0.4400 9.2 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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