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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ISSETGEMGILWEFDPIINKWIRLSMKLKVERKPFAEGALREAYHTVSLGVGTDENYPLLFPPIEMISPISKNNEAMTQL
KNGTKFVLKLYKASRELYFEDVKMQMVCRDWGNKFNQKKPPKKIEFLMSWVVELIDRSPPILCSIEPLLVGEFKKNNSNY
GAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTDPQIHTPDGKGFGLGNLGKAGINKFITTHKCNAVCALLDLDV

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zme:A 262 253 1.0000 0.9160 0.9486 9.65e-176 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
2 8gm4:A 462 228 0.3750 0.1948 0.3947 3.43e-50
3 8fny:A 497 229 0.3708 0.1791 0.3886 3.50e-49 8fny:C, 8fo6:A, 8gm5:A, 7shq:A
4 4kuj:B 268 268 0.2875 0.2575 0.2575 1.26e-17 4kuj:A, 4nl0:A, 4nl0:B
5 1ia9:B 280 155 0.2125 0.1821 0.3290 6.03e-16 1ia9:A, 1iah:A, 1iah:B, 1iaj:B
6 1iaj:A 253 159 0.1917 0.1818 0.2893 1.25e-11
7 3gon:A 329 53 0.0667 0.0486 0.3019 0.90
8 3gqo:A 161 71 0.0833 0.1242 0.2817 5.4 3gqo:B, 3gqo:C, 3gqo:D, 5mqx:A
9 7d6v:C 264 32 0.0542 0.0492 0.4062 7.0 7d6x:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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