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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IRSRQPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNT
QALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPT

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2a11:A 154 154 1.0000 1.0000 1.0000 7.56e-108
2 7r97:A 226 134 0.3506 0.2389 0.4030 8.34e-25 7r97:B
3 6lxe:A 768 174 0.3896 0.0781 0.3448 1.69e-14
4 6lxe:A 768 142 0.2922 0.0586 0.3169 5.18e-14
5 6lxd:A 918 142 0.2922 0.0490 0.3169 4.24e-14 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A
6 6lxd:A 918 115 0.2727 0.0458 0.3652 1.82e-13 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A
7 5b16:A 722 142 0.2922 0.0623 0.3169 6.35e-14
8 5b16:A 722 115 0.2727 0.0582 0.3652 2.77e-13
9 1yyk:A 221 146 0.3052 0.2127 0.3219 1.19e-12 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
10 7eld:A 1137 142 0.3117 0.0422 0.3380 4.11e-10 7ele:A
11 7eld:A 1137 116 0.2208 0.0299 0.2931 7.66e-07 7ele:A
12 5zal:A 1314 138 0.2857 0.0335 0.3188 1.93e-09 2eb1:A, 2eb1:B, 2eb1:C, 4ngd:A, 5zam:A
13 5zal:A 1314 109 0.2468 0.0289 0.3486 4.06e-06 2eb1:A, 2eb1:B, 2eb1:C, 4ngd:A, 5zam:A
14 7v6c:A 1540 162 0.3117 0.0312 0.2963 4.75e-09
15 7v6c:A 1540 57 0.1299 0.0130 0.3509 0.008
16 7w0b:A 1586 160 0.2922 0.0284 0.2812 5.44e-09 7w0d:F
17 7w0b:A 1586 57 0.1234 0.0120 0.3333 0.034 7w0d:F
18 5t16:A 276 118 0.2208 0.1232 0.2881 7.94e-09 2lbs:B, 2lup:B, 4oog:C, 5t16:B, 5t16:I, 5t16:J, 1t4l:B
19 3rv0:B 304 92 0.2143 0.1086 0.3587 8.49e-09 3rv0:A, 3rv0:C, 3rv0:D
20 7yym:A 1281 134 0.2727 0.0328 0.3134 1.01e-08 4ngb:A, 4ngc:A, 4ngg:A, 4nh3:A, 4nh5:A, 4nh6:A, 7yyn:A, 7zpi:A, 7zpj:A, 7zpk:A
21 7yym:A 1281 50 0.1299 0.0156 0.4000 6.96e-04 4ngb:A, 4ngc:A, 4ngg:A, 4nh3:A, 4nh5:A, 4nh6:A, 7yyn:A, 7zpi:A, 7zpj:A, 7zpk:A
22 7vg3:A 860 148 0.3052 0.0547 0.3176 2.13e-08 7vg2:A
23 7vg3:A 860 44 0.1234 0.0221 0.4318 1.76e-05 7vg2:A
24 7xw2:A 725 137 0.2727 0.0579 0.3066 5.33e-08
25 7xw2:A 725 50 0.1299 0.0276 0.4000 6.12e-04
26 8hf0:A 1561 166 0.3182 0.0314 0.2952 5.45e-08 8hf0:D, 8hf1:A, 8hf1:D, 8hf1:G, 7w0a:A, 7w0a:E, 7w0c:A, 7w0d:A, 7w0e:A, 7w0f:A
27 8hf0:A 1561 57 0.1234 0.0122 0.3333 0.034 8hf0:D, 8hf1:A, 8hf1:D, 8hf1:G, 7w0a:A, 7w0a:E, 7w0c:A, 7w0d:A, 7w0e:A, 7w0f:A
28 8dfv:A 1664 143 0.2987 0.0276 0.3217 5.11e-07
29 8dfv:A 1664 86 0.1883 0.0174 0.3372 0.010
30 8dg5:A 1635 143 0.2987 0.0281 0.3217 5.41e-07 8dg7:A
31 8dg5:A 1635 86 0.1883 0.0177 0.3372 0.010 8dg7:A
32 8dga:A 1629 82 0.2143 0.0203 0.4024 1.13e-06
33 8dga:A 1629 86 0.1883 0.0178 0.3372 0.011
34 2ffl:A 732 90 0.2013 0.0423 0.3444 4.78e-06 2ffl:B, 2ffl:C, 2ffl:D, 2qvw:A, 2qvw:B, 2qvw:C, 2qvw:D
35 2ffl:A 732 140 0.2532 0.0533 0.2786 3.98e-05 2ffl:B, 2ffl:C, 2ffl:D, 2qvw:A, 2qvw:B, 2qvw:C, 2qvw:D
36 5mrc:9 202 145 0.2662 0.2030 0.2828 5.54e-05 3j6b:9, 5mre:9, 5mrf:9
37 6ve1:C 268 126 0.1948 0.1119 0.2381 0.52 1c8y:A, 6ve1:B, 6ve1:D
38 7vx0:B 680 30 0.0909 0.0206 0.4667 0.96 7vx0:A, 7vyj:A, 7vyj:B, 7vyo:A, 7vyo:B, 7vyp:A, 7vyp:B, 7vzn:A, 7vzn:B, 7vzq:A, 7vzq:B, 7vzu:A, 7vzu:B, 7vzy:A, 7vzy:B, 7vzz:A, 7vzz:B
39 5eiy:B 658 39 0.1169 0.0274 0.4615 2.6 5ej1:B, 5ejz:B, 4hg6:B, 4p00:B, 4p02:B
40 7cw5:B 394 60 0.1299 0.0508 0.3333 5.1 7cw5:A
41 4bc2:A 528 75 0.1494 0.0436 0.3067 8.9 4bc2:B, 4bc2:C, 4bc4:A, 4bc4:B, 4bc4:C, 4bc5:A, 4bc5:B, 4bc5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218