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BioLiP
>protein
IRCFITPDITSKDCPNGHVCYTKTWCDAFCSIRGKRVDLGCAATCPTVKTGVDIQCCSTDNCNPFPTRKRP

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1lxg:A 71 71 1.0000 1.0000 1.0000 1.79e-47 1lxh:A, 7pc0:K, 6zfm:A, 6zfm:B, 6zfm:D, 6zfm:E
2 8vy8:B 75 67 0.5352 0.5067 0.5672 2.24e-19 1abt:A, 2btx:A, 1bxp:A, 1haa:A, 1haj:A, 5hbv:A, 1hc9:A, 1hc9:B, 1hoy:A, 1idg:A, 1idh:A, 1jbd:A, 1kc4:A, 1kl8:A, 1l4w:A, 1ljz:A, 2qc1:A, 1rgj:A, 6uwz:G, 8vy8:A, 8vy8:E, 8vy8:G
3 1v6p:A 62 55 0.3521 0.4032 0.4545 2.61e-07 1v6p:B
4 5ebx:A 62 57 0.3099 0.3548 0.3860 4.20e-06 6ebx:B
5 9avv:G 62 44 0.2958 0.3387 0.4773 9.10e-06 9avv:F, 9awk:F, 9awk:G
6 5mg9:A 65 58 0.3239 0.3538 0.3966 5.72e-04
7 7c28:A 65 27 0.1831 0.2000 0.4815 0.24 7c28:B
8 2bhi:A 60 64 0.3099 0.3667 0.3438 0.26 2bhi:B, 1h0j:A, 1h0j:B, 1h0j:C, 1xt3:A
9 4aw2:A 398 25 0.1549 0.0276 0.4400 1.2
10 1woj:A 209 24 0.1690 0.0574 0.5000 1.9
11 8q7h:A 1403 26 0.1549 0.0078 0.4231 3.2
12 6gqi:A 529 31 0.1690 0.0227 0.3871 6.3 6gqi:B, 5m0z:A, 5m10:A, 7v8o:A, 7v8o:B, 7v8r:A, 7v8s:A, 7v8s:B
13 2ydc:A 217 18 0.1408 0.0461 0.5556 6.3 4wcc:A, 4wda:A, 4wdb:A, 4wdf:A, 4wdg:A, 4wfr:A, 2ydb:A, 2ydd:A, 2yoz:A, 2yp0:A, 2ypc:A, 2ype:A, 2yph:A, 2yq9:A, 3zbr:A, 3zbr:B, 3zbs:A, 3zbz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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