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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IQLPTQPLNSEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVKYLYLCVFHMQT
SEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVITPSKKNYNDCIQGALLHQDVNTAWNLYQELL
GHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGC
GKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVS
QLAKRNLRLLVLGRKHMLRRSSQWSRDEMEEVQKQASCFFADDISEDAPFLLYATLHSGNHCRFITRDLMRDHKACLPDA
KTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTTGDSWHIPYDEDLVERCSCEVPTKWLCLHQ

The query sequence (length=470) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cbk:E 470 470 1.0000 1.0000 1.0000 0.0 7onu:E
2 4xgl:A 342 375 0.7234 0.9942 0.9067 0.0 4rou:B, 4rou:A, 4xgm:A
3 4g23:A 476 496 0.2255 0.2227 0.2137 1.25e-13 6bv5:A, 6bv6:A, 6bv8:A, 6bv9:A, 4g24:A, 4g25:A, 4g26:A, 6lvr:C, 6lvr:A
4 6een:A 315 161 0.0894 0.1333 0.2609 8.78e-04 6een:B, 6een:C, 6een:D
5 5diz:A 474 258 0.1021 0.1013 0.1860 0.002 5diz:B, 5ft9:A, 5ft9:B
6 5i9h:A 368 98 0.0574 0.0734 0.2755 0.002 5i9d:A
7 6xyw:BG 364 80 0.0532 0.0687 0.3125 0.031
8 8r42:B 362 73 0.0426 0.0552 0.2740 0.21 8r41:A, 8r41:B, 8r42:A, 8r4x:A, 8r4x:B, 8r4x:C, 8r4x:D
9 2aos:A 361 73 0.0447 0.0582 0.2877 0.91 2fdm:A, 4mav:A, 4ml4:A, 4nsb:A, 2olh:A, 4q7n:A, 5z05:A, 5z3s:A, 5z4w:A, 1zbc:A, 1zbk:A, 1zbv:A, 1zbw:A, 1zl1:A
10 7pnt:4 589 68 0.0383 0.0306 0.2647 2.3 7pnu:4, 7pnv:4, 7pnw:4
11 8any:A4 595 73 0.0426 0.0336 0.2740 5.8 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4
12 2atv:A 168 47 0.0319 0.0893 0.3191 6.3
13 3ce2:A 595 56 0.0468 0.0370 0.3929 7.0
14 2lcq:A 161 137 0.0787 0.2298 0.2701 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218