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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IPRNVYEKQKHYLQIELLKFQKWVKENNKKVLIIFEGRDAAGKGGTIKRMMEHLNPRGAKVIALEKPSEQERNQWYFQRY
IEHLPSGGEIVLFDRSWYNRAGVERVMGFCTEREYFLFLEQAPQLEKMLVDSGTMIIKFWFSVSQQEQKNRFAARESHPL
KQWKLSPIDKASLDKWDDYTEAKERMFIYTDKPYAPWVIVKSDDKKRARLNAIRYILNNVDYDNKDHEVAIPPDPLIVGT
SS

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5llf:D 266 242 0.9959 0.9060 0.9959 0.0 5ll0:A, 5ll0:B, 5ll0:C, 5ll0:D, 5llb:A, 5llb:B, 5llb:C, 5llb:D, 5llf:A, 5llf:B, 5llf:C
2 6dzg:A 288 241 0.4959 0.4167 0.4979 3.12e-89 6dzg:B, 6dzg:C, 6dzg:D
3 6anh:A 300 210 0.3182 0.2567 0.3667 9.62e-34 6an9:A, 6ang:A, 6aqn:A, 6au0:A, 6b18:A
4 5o6m:D 264 178 0.2603 0.2386 0.3539 9.48e-33 5lc9:B, 5lc9:C, 5lc9:D, 5lcd:A, 5lcd:B, 5lcd:C, 5lcd:D, 5ld1:A, 5ld1:D, 5ld1:B, 5ld1:C, 5ldb:A, 5ldb:B, 5ldb:C, 5ldb:D, 5maq:A, 5maq:B, 5maq:C, 5maq:D, 5o6k:A, 5o6k:B, 5o6k:C, 5o6k:D, 5o6m:A, 5o6m:B, 5o6m:C
5 6aqe:B 266 200 0.2603 0.2368 0.3150 8.05e-30 6aqe:A, 7nmj:A, 7nmj:B, 7nmj:C, 7nmj:D, 7plj:A, 7plj:B, 7plj:C, 7plj:D
6 3hjn:A 189 44 0.0661 0.0847 0.3636 0.075 3hjn:B
7 7fgq:A 190 54 0.0579 0.0737 0.2593 0.91
8 5h56:B 195 67 0.0826 0.1026 0.2985 1.9 5h56:A, 5h5k:A, 5h5k:B, 4s2e:A, 4s2e:B, 4s35:A, 4s35:B, 5xai:B, 5xai:A, 5xb2:B, 5xb2:A, 5xb3:A, 5xb3:B, 5xb5:A
9 3urm:A 329 118 0.1157 0.0851 0.2373 2.6 3urm:B, 3uug:A, 3uug:B
10 8d41:A 307 67 0.0620 0.0489 0.2239 2.7 8d41:B
11 2ynp:A 601 67 0.0661 0.0266 0.2388 3.2 8ens:A, 8enw:A, 8enw:B, 8enx:A, 8hqt:A, 8hqv:A, 8hqx:A, 4j73:A, 4j77:A, 4j77:B, 4j78:A, 4j79:A, 4j81:B, 4j81:A, 4j82:A, 4j82:B, 4j84:A, 4j84:B, 4j86:A, 4j86:B, 2ynn:A
12 5foe:B 435 58 0.0579 0.0322 0.2414 3.6 5foe:A
13 5fl3:A 354 58 0.0744 0.0508 0.3103 4.0
14 1w5f:A 315 71 0.0744 0.0571 0.2535 4.5 1w5f:B
15 7ajt:UR 482 42 0.0620 0.0311 0.3571 6.7 7aju:UR, 7d4i:B8, 7d5s:B8, 7d5t:B8, 7d63:B8, 6ke6:B8, 6lqp:B8, 6lqq:B8, 6lqr:B8, 6lqs:B8, 6lqt:B8, 6lqu:B8, 6lqv:B8, 6nd4:S, 7suk:LS, 5wlc:LS, 6zqa:UR, 6zqb:UR, 6zqc:UR, 6zqd:UR
16 7dmb:A 358 54 0.0785 0.0531 0.3519 7.0 7dmb:B
17 5thy:A 387 42 0.0661 0.0413 0.3810 7.9 5thy:B, 5thz:B, 5thz:A
18 2wwf:C 212 39 0.0537 0.0613 0.3333 7.9 2wwf:A, 2wwf:B, 2wwg:A, 2wwg:B, 2wwg:C, 2wwh:A, 2wwh:B, 2wwh:C, 2wwi:A, 2wwi:B, 2wwi:C, 2yof:A, 2yof:B, 2yof:C, 2yog:A, 2yog:B, 2yoh:A, 2yoh:B
19 7aor:r 465 82 0.0785 0.0409 0.2317 8.2
20 8kab:h 430 41 0.0579 0.0326 0.3415 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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