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BioLiP
>protein
IPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8s8o:A 52 39 0.9744 0.7308 0.9744 2.71e-22 2drn:A, 2drn:B, 2h9r:B, 2hwn:A, 2hwn:B, 2hwn:C, 2hwn:D, 2izx:A, 2izx:B, 8s8o:B, 3tmh:B, 3tmh:G, 4zp3:A, 4zp3:B, 4zp3:C, 4zp3:D, 4zp3:E, 4zp3:F, 4zp3:L, 4zp3:I, 4zp3:J, 4zp3:K
2 8q0n:B 831 24 0.2308 0.0108 0.3750 6.1
3 6g0c:A 624 27 0.2308 0.0144 0.3333 7.6
4 1bp3:B 197 23 0.2308 0.0457 0.3913 8.3 3d48:R
5 1fx7:A 230 34 0.3333 0.0565 0.3824 9.3 1b1b:A, 1fx7:B, 1fx7:C, 1fx7:D, 2isz:A, 2isz:B, 2isz:C, 2isz:D, 2it0:A, 2it0:B, 2it0:C, 2it0:D, 1u8r:A, 1u8r:B, 1u8r:C, 1u8r:D, 1u8r:G, 1u8r:H, 1u8r:I, 1u8r:J
6 6bq1:E 1510 22 0.2564 0.0066 0.4545 9.7 6bq1:A
7 2yev:A 780 29 0.2821 0.0141 0.3793 9.7 2yev:D
8 8fkt:SY 378 18 0.2564 0.0265 0.5556 9.9 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
9 2wzv:B 223 13 0.2308 0.0404 0.6923 10.0 2wzv:A, 2wzw:A, 2wzw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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