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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
INLTGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTD
ITLDNIEFDFGKDVRDIVDGVTKLGHRKMLMAMSKDIRVILVKLADRLHNMRTLKQERISRETMEIYAPLAHRLGISRIK
WELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFD
LIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKGPIEIQIRTKEMHQVAEYGVAANWI
KELVEL

The query sequence (length=326) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1vj7:A 326 326 1.0000 1.0000 1.0000 0.0 1vj7:B
2 6yxa:A 536 338 0.6135 0.3731 0.5917 1.50e-140 8acu:A, 8acu:B
3 7oiw:A 327 323 0.5613 0.5596 0.5666 1.16e-133 7oiw:B
4 7ohg:A 351 341 0.4632 0.4302 0.4428 3.94e-98 6s2t:A, 6s2u:A, 6s2v:A
5 6s2v:C 336 326 0.4540 0.4405 0.4540 3.33e-95 6s2v:B
6 5xnx:D 321 321 0.4294 0.4361 0.4361 2.70e-88 5xnx:C
7 5l3p:z 545 281 0.3589 0.2147 0.4164 1.36e-73
8 5iqr:8 615 294 0.3681 0.1951 0.4082 2.05e-70
9 5kpv:33 675 273 0.3558 0.1719 0.4249 8.39e-70 5kps:A, 5kpw:33, 5kpx:33
10 7qpr:D 689 332 0.3129 0.1480 0.3072 6.80e-42 7qpr:A, 7qpr:B, 7qpr:C, 7qps:A
11 7qps:B 303 319 0.2699 0.2904 0.2759 3.85e-29
12 3nr1:A 178 130 0.1656 0.3034 0.4154 1.33e-17 3nr1:B, 5vxa:A, 5vxa:B
13 7qoe:A 187 121 0.1411 0.2460 0.3802 7.01e-13
14 3nqw:A 178 122 0.1411 0.2584 0.3770 7.69e-12 3nqw:B
15 7qoc:A 193 123 0.1135 0.1917 0.3008 5.72e-11 7qoc:B, 7qod:A, 7qod:B
16 7smg:B 144 84 0.0890 0.2014 0.3452 3.11e-06 7smg:A, 7smg:C, 7smg:D
17 6ewz:A 202 77 0.0828 0.1337 0.3506 3.13e-05 6ewz:B, 6ex0:A, 6ex0:B, 6fgx:A, 6fgx:B
18 6z3o:AAA 178 150 0.1319 0.2416 0.2867 0.005 6yvc:A, 6yvc:B, 6yvc:C, 6yvc:D, 6z3o:BBB, 6z3o:CCC, 6z3o:DDD
19 8otz:EV 425 66 0.0583 0.0447 0.2879 0.082
20 7rro:D6 319 66 0.0583 0.0596 0.2879 0.12
21 5ded:A 196 106 0.0920 0.1531 0.2830 1.4 5ded:D, 5ded:B, 5ded:C, 5ded:E, 5ded:F, 5ded:G, 5ded:H, 5f2v:V, 5f2v:X, 5f2v:T, 5f2v:S, 5f2v:Y, 5f2v:O, 5f2v:Z, 5f2v:W, 5f2v:U, 5f2v:P, 5f2v:R, 5f2v:Q
22 2dq0:A 447 76 0.0613 0.0447 0.2632 3.7 2dq0:B, 2zr2:A, 2zr2:B
23 8f29:D 473 38 0.0491 0.0338 0.4211 3.8 4b2q:D, 4b2q:F, 4b2q:d, 4b2q:f, 6b8h:D, 6b8h:F, 6b8h:Y, 6b8h:c, 6cp3:D, 6cp3:F, 6cp6:D, 6cp6:F, 8f29:F, 8f2k:E, 8f2k:F, 8f39:E, 8f39:F, 8fl8:E, 8fl8:F, 2hld:D, 2hld:F, 2hld:M, 2hld:N, 2hld:O, 2hld:V, 2hld:X, 5lqx:D, 5lqx:E, 5lqx:F, 5lqy:D, 5lqy:E, 5lqy:F, 5lqz:D, 5lqz:E, 5lqz:F, 7md2:D, 7md3:D, 3oe7:D, 3oe7:F, 3oe7:M, 3oe7:N, 3oe7:O, 3oe7:V, 3oe7:X, 3oee:D, 3oee:F, 3oee:M, 3oee:O, 3oee:V, 3oee:X, 3oeh:D, 3oeh:F, 3oeh:M, 3oeh:O, 3oeh:V, 3oeh:X, 3ofn:D, 3ofn:F, 3ofn:M, 3ofn:O, 3ofn:V, 3ofn:X, 7tjs:D, 7tju:D, 7tju:E, 7tjv:D, 7tjv:F, 7tjw:D, 7tjw:F, 7tjx:D, 7tjx:F, 2wpd:D, 2wpd:F, 2xok:D, 2xok:F, 3zia:D, 3zia:E, 3zia:F, 3zia:N, 3zia:O, 3zia:P, 3zry:D, 3zry:F
24 6hiv:A9 53 39 0.0368 0.2264 0.3077 4.6 6hix:A9
25 6eac:A 476 68 0.0521 0.0357 0.2500 4.8 6eac:B, 6eac:C, 6eac:D
26 3x1l:D 331 141 0.1074 0.1057 0.2482 5.4 3x1l:C, 3x1l:E
27 4xqk:A 1517 57 0.0552 0.0119 0.3158 5.6 4xqk:B
28 5ffj:B 1232 57 0.0552 0.0146 0.3158 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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