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BioLiP
>protein
INLPSLFVPLVGLLFPAVAMASLFLHVEKRL

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ly5:i 33 31 1.0000 0.9394 1.0000 3.15e-15 7dkz:I, 5l8r:I, 3lw5:I, 2o01:I, 2wsc:I, 2wse:I, 2wsf:I, 4xk8:i, 6yac:I, 6yez:I, 6zoo:I, 6zxs:I
2 7wfd:AI 33 29 0.7419 0.6970 0.7931 6.60e-12 8j6z:I, 8j7a:I, 8j7b:I, 7wfe:BI, 7wg5:AI, 7wg5:BI
3 8bcv:I 33 30 0.7097 0.6667 0.7333 6.42e-11 8bcw:I, 7ew6:I, 7ewk:I, 7f9o:I, 7f9o:l, 5zji:I
4 7yca:I 35 28 0.7419 0.6571 0.8214 6.92e-11
5 6igz:I 32 27 0.6774 0.6562 0.7778 8.45e-10
6 7a4p:I 35 28 0.6774 0.6000 0.7500 1.01e-09 6zzx:I, 6zzy:I
7 8htu:I 34 28 0.5806 0.5294 0.6429 3.05e-09 7ksq:I, 7kux:I, 6l35:I, 7xqp:I
8 7dz7:I 42 27 0.5484 0.4048 0.6296 1.42e-07 7bgi:I, 7blx:I, 8cmo:I, 7d0j:I, 7dz8:I, 6ijj:I, 6ijo:I, 6jo5:I, 6jo6:I, 7r3k:I, 7zq9:I, 7zq9:I2, 7zqc:I, 7zqd:I, 7zqd:I2
9 7y5e:IN 31 27 0.5161 0.5161 0.5926 1.86e-06 7y5e:I2, 7y7a:I7, 7y7a:Io
10 7qco:I 39 28 0.5484 0.4359 0.6071 2.14e-06 7qco:P, 7qco:p, 7qco:i
11 7dr0:I 30 29 0.4839 0.5000 0.5172 2.82e-06 7dr1:I, 7dr2:aI, 7dr2:bI, 7dr2:cI, 7dr2:dI
12 8am5:i 40 28 0.4839 0.3750 0.5357 3.90e-06 8asl:i, 8asp:i, 6hqb:I, 4l6v:I, 4l6v:i, 4l6v:9, 6nwa:I, 6nwa:i, 6nwa:R, 5oy0:I, 5oy0:i, 5oy0:h, 7umh:I, 7umh:R, 7umh:i, 6uzv:I, 6uzv:i, 6uzv:h
13 6l4u:I 35 28 0.4839 0.4286 0.5357 9.31e-06
14 6sl5:I 39 26 0.4839 0.3846 0.5769 3.19e-05
15 8wm6:I 34 28 0.4194 0.3824 0.4643 4.76e-05 8wmj:I, 8wmv:I, 8wmw:I
16 6kif:I 38 28 0.5161 0.4211 0.5714 8.07e-05 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
17 7y7b:I 33 28 0.4194 0.3939 0.4643 9.67e-05 7y8a:I
18 6vpv:I 38 28 0.4839 0.3947 0.5357 2.70e-04 6vpv:i, 6vpv:7
19 8wey:I 32 27 0.4839 0.4688 0.5556 6.51e-04 7blz:I, 5zgb:I, 5zgh:I
20 4fe1:I 38 28 0.4194 0.3421 0.4643 0.003 7fix:I1, 7fix:I2, 7fix:I3, 1jb0:I, 6k33:aI, 6k33:bI, 6k33:cI, 6lu1:I, 7m75:I, 7m76:I, 7m78:I, 3pcq:I, 6pfy:I, 6pfy:R, 6pfy:e, 6pgk:I, 6pgk:R, 6pgk:e, 6tra:I, 6trc:I, 6trc:7, 6trc:i, 6trd:I, 6trd:7, 6trd:i, 5zf0:I1, 5zf0:I2, 5zf0:I3, 5zf0:I4, 5zf0:I5, 5zf0:I6
21 6kmw:aI 38 28 0.4194 0.3421 0.4643 0.009 6kmw:cI, 6kmw:bI
22 6k61:I 34 28 0.3548 0.3235 0.3929 0.009 6jeo:aI, 6jeo:bI, 6jeo:cI, 6jeo:dI, 6k61:i, 6tcl:I1, 6tcl:I2, 6tcl:I, 6tcl:II, 7y3f:I
23 8jjr:i 120 22 0.3871 0.1000 0.5455 0.014
24 8jze:i 119 22 0.3548 0.0924 0.5000 0.099 8jzf:i
25 7coy:aI 30 27 0.3548 0.3667 0.4074 0.21 7coy:bI, 7coy:cI
26 7lx0:R 42 28 0.3548 0.2619 0.3929 3.5 7lx0:I, 7lx0:i, 6pnj:I, 6pnj:R, 6pnj:i
27 3opy:B 884 17 0.3548 0.0124 0.6471 10.0 3opy:D, 3opy:F, 3opy:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218