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BioLiP
>protein
IMEKGLLEKYNSLLEFFKNKKVIVAYSGGVDSTLISKIASDNAQTLAVTIDNGFFSENVIKKAENRAKKYNIPQKTIKID
YLNEITSKDLENRCYNCKKRIAEELKRIKNELNYDIIVDGTIYDDIFEDRPGIKAFNESNIISPLSNLKFSKNDVFELSN
YLKIDIPKKDTCMISKENMAKSNLAEEFIKLNFHIESYLRVRYLENIAIIELTKNESEKIFDNDSIERINTELKKIGFVV
LDLNF

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8cnz:D 261 255 1.0000 0.9387 0.9608 4.00e-170 8cnz:A, 8cnz:B, 8cnz:C, 8cnz:E, 8cnz:F, 8cnz:G, 8cp3:A, 8cp3:B, 8cp4:A, 8cp4:B, 8cp4:C, 8cp4:D, 8cp4:E, 8cp4:F, 8cp4:G
2 6b2m:A 268 259 0.3020 0.2761 0.2857 1.24e-11 6b2m:B, 6b2m:C, 6b2m:D, 6b2m:E, 6b2m:F, 5udr:A, 5udr:B, 5udr:C, 5udr:D, 5udr:E, 5udr:F, 5uds:A, 5uds:B, 5uds:C, 5uds:D, 5uds:E, 5uds:F, 5udt:A, 5udt:B, 5udt:C, 5udx:D, 5udx:F, 6utp:F
3 2vxo:B 658 74 0.1143 0.0426 0.3784 2.12e-04 2vxo:A
4 4wio:A 525 177 0.2122 0.0990 0.2938 0.001 3uow:A
5 2ywc:A 475 149 0.1633 0.0842 0.2685 0.012 2ywc:B, 2ywc:C, 2ywc:D
6 3uow:B 477 119 0.1306 0.0671 0.2689 0.077
7 8ay0:B 496 148 0.1469 0.0726 0.2432 0.21 8ay0:A, 8ay0:C
8 4xfj:B 397 43 0.0694 0.0428 0.3953 0.65 4xfj:A
9 1xng:B 262 165 0.1755 0.1641 0.2606 1.0 1xng:A
10 5tw7:F 490 189 0.1918 0.0959 0.2487 1.1 5tw7:E
11 1j1z:A 386 35 0.0571 0.0363 0.4000 1.3 1j1z:B, 1j1z:C, 1j1z:D, 1j20:A, 1j20:B, 1j20:C, 1j20:D, 1j21:A, 1j21:B, 1j21:C, 1j21:D, 1kh2:A, 1kh2:B, 1kh2:C, 1kh2:D, 1kh3:A, 1kh3:B, 1kh3:C, 1kh3:D, 1kor:A, 1kor:B, 1kor:C, 1kor:D
12 6jp9:A 298 165 0.1714 0.1409 0.2545 1.9 6jp9:B, 6jp9:C, 6jp9:D
13 2pg3:A 221 74 0.0898 0.0995 0.2973 3.8
14 2e21:A 317 23 0.0367 0.0284 0.3913 3.8 2e21:C, 2e89:A, 2e89:B, 2e89:C, 2e89:D
15 3lju:X 373 59 0.0694 0.0456 0.2881 4.0 3feh:A, 3fm8:C, 3fm8:D, 3mdb:C, 3mdb:D
16 3fiu:A 238 159 0.1755 0.1807 0.2704 4.3 3fiu:B, 3fiu:C, 3fiu:D
17 7ljo:A 290 30 0.0531 0.0448 0.4333 4.4
18 2e18:A 256 73 0.0857 0.0820 0.2877 4.5 2e18:B
19 1q19:A 500 156 0.1429 0.0700 0.2244 7.5 1q19:B, 1q19:C, 1q19:D
20 8fia:A 1772 57 0.0816 0.0113 0.3509 7.7
21 4y1p:B 336 63 0.0816 0.0595 0.3175 9.6 4y1p:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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