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BioLiP
>protein
ILQHPDGTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYLPKYYGIWSPPTAPNDLYLKLEDVTHKFNKPCIMD
VKIGQKSYDPFASSEKIQQQVSKYPLMEEIGFLVLGMRVYHVHSDSYETENQHYGRSLTKETIKDGVSRFFHNGYCLRKD
AVAASIQKIEKILQWFENQKQLNFYASSLLFVYEGSGGEVEVRMIDFAHVFPSNTIDEGYVYGLKHLISVLRSILDN

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5w2i:A 239 239 1.0000 0.9916 0.9916 9.02e-179 6m88:A, 6m89:A, 6m8a:A, 6m8b:A, 6m8c:A, 6m8d:A, 6m8e:A, 5w2h:A
2 4o4e:A 246 247 0.2700 0.2602 0.2591 3.28e-21 4o4d:A, 4o4f:A, 8omi:A
3 2iew:A 258 263 0.3207 0.2946 0.2890 1.59e-20 2if8:A
4 8t8z:A 217 239 0.2658 0.2903 0.2636 4.94e-13 8t8u:A, 8t8v:A, 8t8w:A, 8t8x:A, 8t8y:A, 8t90:A, 8t91:A, 8t92:A, 8t93:A, 8t95:A, 8t96:A, 8t97:A
5 2aqx:A 289 250 0.2489 0.2042 0.2360 2.23e-08 2aqx:B
6 8ppg:B 243 217 0.2110 0.2058 0.2304 7.31e-07
7 2a98:A 259 238 0.2321 0.2124 0.2311 1.53e-06
8 8ppb:A 276 251 0.2405 0.2065 0.2271 4.76e-05 8pp8:A, 8pp8:B, 8pp9:A, 8pp9:B, 8ppa:A, 8ppa:B, 8ppb:B, 8ppc:A, 8ppc:B, 8ppd:A, 8ppd:B, 8ppe:A, 8ppe:B, 8ppf:A, 8ppf:B, 8ppg:A, 8pph:A, 8pph:B, 8ppi:A, 8ppi:B, 8ppj:A, 8ppj:B, 1tzd:A, 1tzd:B, 1w2c:A, 1w2c:B, 1w2d:A, 1w2d:B
9 6mrj:B 142 95 0.0928 0.1549 0.2316 0.18 2cad:A, 2cad:B, 3lgh:A, 3lgh:B, 3lgh:C, 3lgh:D, 6mrj:A, 6mrj:C, 6mrj:D, 3pht:A, 3pht:B, 3qsi:B, 3qsi:C, 3qsi:D, 3qsi:A, 3qsi:F, 3qsi:G, 3qsi:H, 3qsi:E, 3qsi:I, 2wvf:B, 2y3y:A, 2y3y:B, 2y3y:C, 2y3y:D
10 4laj:A 343 38 0.0549 0.0379 0.3421 5.6 4dvr:G, 2i5y:G, 2i5y:P, 2i60:G, 2i60:P, 4jzw:G, 4jzw:A, 4jzz:A, 4k0a:A, 4ka2:A, 4laj:J, 4laj:F, 4laj:B, 4r4f:A, 1yyl:G, 1yyl:P, 1yym:G, 1yym:P
11 2gdz:A 266 25 0.0506 0.0451 0.4800 7.2 8cvn:A, 8cvn:B, 8cwl:A, 8cwl:B
12 6hat:B 273 112 0.1224 0.1062 0.2589 8.3 6hat:A, 6hau:A, 6hau:B
13 6xyw:Bv 149 43 0.0591 0.0940 0.3256 8.8
14 8d0y:G 455 38 0.0549 0.0286 0.3421 9.8 5cez:G, 6ch8:G, 6de7:G, 5i8h:A, 5i8h:C, 7l7u:A, 7l7u:C, 7l7u:E, 6mtj:G, 6mtn:G, 6mu6:G, 6mu7:G, 6mu8:G, 7pc2:A, 7rai:A, 7rai:C, 7rai:E, 8s2e:E, 5t3z:G, 8tjr:B, 8tjr:C, 8tjs:G, 8tjs:N, 8tjs:O, 8ttw:E, 8ttw:I, 8ttw:A, 4tvp:G, 5u7m:G, 5u7o:G, 7ucf:G, 5utf:G, 5v7j:G, 4zmj:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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