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BioLiP
>protein
IKQLFTHTQTVTSEFIDHNNHMHDANYNIIFSDVVNRFNYSHFTLEEHTTYLSELSLGDVFTVTLYIYDYDYKRLHLFLT
LTKEDGTLASTNEVMMIAHYYKNQPTITWPEQLGHKIAIP

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eo2:D 120 120 1.0000 1.0000 1.0000 1.30e-86
2 5eo2:C 158 154 1.0000 0.7595 0.7792 2.09e-78 5eo2:B, 5eo2:E, 5eo2:F
3 5eo2:A 133 136 0.9750 0.8797 0.8603 2.87e-76
4 2np0:A 1289 61 0.1583 0.0147 0.3115 0.46 1epw:A, 2etf:A, 2etf:B, 1f31:A, 1f82:A, 6g5f:B, 6g5g:B, 6g5k:A, 6g5k:B, 1g9a:A, 1g9b:A, 1g9c:A, 1g9d:A, 1i1e:A, 4kbb:A, 4kbb:B, 7na9:A, 2nm1:A, 6qns:A, 1s0b:A, 1s0c:A, 1s0d:A, 1s0e:A, 1s0f:A, 7t5f:A, 7t5f:D, 2xhl:A, 3zuq:A, 6zvm:AAA
5 3ldf:A 380 101 0.2417 0.0763 0.2871 4.0
6 7sze:B 329 109 0.2500 0.0912 0.2752 5.9 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
7 8zmr:A 384 52 0.1333 0.0417 0.3077 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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