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BioLiP
>protein
IKQKLETQFTCLFCNHDNSVVCTLDKKNSIGLLECKKCNLSFQAPINSLSQPIDIYSDWIDACE

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8he5:M 64 64 1.0000 1.0000 1.0000 1.52e-42 6ir9:M, 6j4w:M, 6j4x:M, 6j4y:M, 6j51:M, 8jh2:M, 7wbv:M, 7wbx:M, 7xn7:M, 5xog:M, 7xse:M, 7xsx:M, 7xsz:M, 7xt7:M, 7xtd:M, 7xti:M
2 1wii:A 85 60 0.5156 0.3882 0.5500 3.73e-21 8b3d:M, 8b3f:M
3 7olc:Lp 91 45 0.2031 0.1429 0.2889 0.038 8ia0:Lp, 7old:Lp, 8oo0:Lp, 8pv1:Lp, 8pv2:Lp, 8pv3:Lp, 8pv4:Lp, 8pv5:Lp, 8pv6:Lp, 8pv7:Lp, 8pv8:Lp, 8pvk:Lp, 8pvl:Lp, 7r81:r1, 7z3n:Lp, 7z3o:Lp
4 5xy3:p 89 48 0.1719 0.1236 0.2292 0.20
5 8u7h:C 1111 67 0.2969 0.0171 0.2836 0.58
6 8smc:C 1084 67 0.2969 0.0175 0.2836 0.62
7 4v4n:Ai 78 62 0.1875 0.1538 0.1935 2.1 4v6u:Bi
8 4xsv:A 306 27 0.1562 0.0327 0.3704 2.7 3elb:A
9 9ezy:B 657 19 0.1250 0.0122 0.4211 3.2
10 5u2o:A 543 27 0.1562 0.0184 0.3704 3.9
11 6vno:A 1084 48 0.2500 0.0148 0.3333 5.4 6vp6:A
12 8tzb:A 920 48 0.2500 0.0174 0.3333 6.2
13 7l48:A 522 43 0.2344 0.0287 0.3488 6.5 7c7l:A, 7l48:B, 7l49:A, 7l49:B
14 8tyq:A 957 48 0.2500 0.0167 0.3333 6.5 8tze:A
15 8fo9:A 1173 70 0.3125 0.0171 0.2857 6.7 8fo9:C
16 6rm3:LPP 83 57 0.2188 0.1687 0.2456 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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