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BioLiP
>protein
IKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGH
VFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKY
KL

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2gl0:B 163 162 1.0000 0.9939 1.0000 1.04e-115 2gl0:C, 2gl0:A, 2gl0:E, 2gl0:F, 2gl0:D, 2jb7:A, 2jb7:C, 2jb7:B
2 1csn:A 293 45 0.0926 0.0512 0.3333 2.7 2csn:A, 1eh4:A, 1eh4:B
3 8a5e:A 583 48 0.0802 0.0223 0.2708 3.5 8a5e:D, 7q4v:A, 7q4v:E, 7q4w:A, 7q4w:E
4 3d03:A 274 41 0.0679 0.0401 0.2683 3.7 3d03:B, 3d03:C, 3d03:D, 3d03:E, 3d03:F, 2dxl:A, 2dxl:B, 2dxn:A, 2dxn:B, 2zo9:B, 2zo9:C, 2zoa:A, 2zoa:B
5 7bkb:H 438 110 0.1667 0.0616 0.2455 3.7 7bkb:h, 7bkc:H, 7bkc:h
6 5xt2:B 204 99 0.1420 0.1127 0.2323 5.8 5xt2:A, 5xt2:C, 5xt2:D, 5xt2:E
7 4v6w:CF 229 31 0.0741 0.0524 0.3871 8.8 6xu6:CF, 6xu7:CF, 6xu8:CF

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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