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BioLiP
>protein
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPM

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7k95:A 53 53 1.0000 1.0000 1.0000 2.29e-35 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
2 2d9m:A 69 25 0.2830 0.2174 0.6000 2.10e-04
3 6dnh:C 117 46 0.2830 0.1282 0.3261 6.18e-04 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
4 1rgo:A 70 56 0.3396 0.2571 0.3214 0.016
5 6eoj:B 94 40 0.2264 0.1277 0.3000 0.044 7zgp:B, 7zgr:B
6 5elk:A 121 53 0.3396 0.1488 0.3396 0.11
7 2cqe:A 98 26 0.1887 0.1020 0.3846 0.13
8 2cqe:A 98 43 0.2453 0.1327 0.3023 3.2
9 2d9n:A 77 23 0.1698 0.1169 0.3913 0.25 2rhk:C
10 6ff4:t 172 25 0.2453 0.0756 0.5200 0.37 8ch6:Z, 6ff7:t, 7qtt:Z
11 7dvq:M 191 23 0.2453 0.0681 0.5652 0.39 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
12 4c3b:C 178 30 0.2264 0.0674 0.4000 0.41 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
13 7dco:M 176 23 0.2075 0.0625 0.4783 0.54 5gm6:a
14 6pmg:X 35 24 0.2075 0.3143 0.4583 0.77
15 3jb9:Y 261 19 0.1321 0.0268 0.3684 1.7
16 3jb9:Y 261 19 0.1321 0.0268 0.3684 8.5
17 5elh:A 142 23 0.2075 0.0775 0.4783 1.9 5elh:B
18 2fc6:A 50 32 0.2453 0.2600 0.4062 2.5
19 7dco:R 261 19 0.1321 0.0268 0.3684 2.6 7b9v:M, 6bk8:G, 6exn:M, 5gm6:R, 5gmk:R, 6j6g:R, 6j6h:R, 6j6n:R, 6j6q:R, 5lj3:M, 5lj5:M, 5mps:M, 5mq0:M, 3tp2:A, 3tp2:B, 3u1l:A, 3u1m:A, 5wsg:R, 5y88:N, 5ylz:N
20 5lqw:F 218 19 0.1321 0.0321 0.3684 3.4
21 7nii:E 525 17 0.1698 0.0171 0.5294 5.0 7nih:A, 7nih:B, 7nih:C, 7nih:D, 7nih:E, 7nih:F, 7nih:G, 7nih:H
22 7nii:C 565 17 0.1698 0.0159 0.5294 5.0 7nii:B, 7nii:G, 7nii:H
23 7nii:A 663 17 0.1698 0.0136 0.5294 5.0 7nii:D, 7nii:F
24 4cs7:C 172 29 0.1887 0.0581 0.3448 5.6 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
25 7mq8:LH 746 32 0.2075 0.0147 0.3438 5.6 7mq9:LH, 7mqa:LH
26 6fdz:U 265 39 0.2453 0.0491 0.3333 5.8 6fdy:U
27 4pde:A 244 21 0.1698 0.0369 0.4286 6.1
28 5aij:A 630 30 0.2264 0.0190 0.4000 6.2 5a23:A, 5a23:B, 5a23:C, 5a23:D, 5ajl:A, 5ajl:B, 2cfu:A, 2cfz:A, 2cg2:A, 2cg3:A
29 8ro0:O 342 21 0.1509 0.0234 0.3810 8.1 8ro1:O
30 3lqu:A 205 30 0.2264 0.0585 0.4000 9.1 1g58:A, 3lrj:A, 3lrj:B, 3lrj:C, 3lrj:D, 3ls6:A, 3ls6:B
31 4p6p:B 218 33 0.1887 0.0459 0.3030 9.1 4p6c:A, 4p6c:B, 4p6d:A, 4p6d:B, 4p6p:A, 4p77:A, 4p77:B, 4p8e:A, 4p8e:B, 7uf0:A, 7uf1:A, 7uf2:A, 7uf3:A, 7uf4:A, 7uf5:A
32 6f59:B 185 11 0.1132 0.0324 0.5455 9.8 8a7n:A, 8cdn:A, 6f58:A, 6f58:B, 6f59:A, 8fmu:A, 8fmu:B, 5qrf:A, 5qrg:A, 5qrh:A, 5qri:A, 5qrj:A, 5qrk:A, 5qrl:A, 5qrm:A, 5qrn:A, 5qro:A, 5qrq:A, 5qrr:A, 5qrs:A, 5qrt:A, 5qru:A, 5qrv:A, 5qrw:A, 5qrx:A, 5qry:A, 5qrz:A, 5qs0:A, 5qs1:A, 5qs3:A, 5qs4:A, 5qs5:A, 5qs6:A, 5qs7:A, 5qs9:A, 5qsa:A, 5qsb:A, 5qsc:A, 5qsd:A, 5qse:A, 5qsf:A, 5qsg:A, 5qsh:A, 5qsj:A, 5qsk:A, 5qsl:A, 5qt0:A, 1xbr:A, 1xbr:B, 7zk2:A, 6zu8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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