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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IIPWEERPAGCKDVLWRSVANPIIPRDLLPTSNSIFNSAVVPFGDGFAGVFRCDDTSRRMRLHVGFSKDAINWNIKEEPL
KFQCDDEEIGTWVYGYDPRVCFIEDRYYVTWCNGYHGPTIGVAYTFDFETFHQLENAFIPFNRNGVLFPRKINGRFAMLS
RPSDNGHTPFGDIFYSESPDMEFWGRHRHVMSPAAFEVSAWQCTKIGAGPIPVETPEGWLLIYHGVLHSCNGYVYSFGSA
LLDLDEPWKVKFRSGPYLLAPREPYECMGDVPNVCFPCAALHDNETGRIAIYYGCADTVTGLAFGYIPEIIEFTKRTSII

The query sequence (length=320) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4udg:B 321 320 1.0000 0.9969 1.0000 0.0 4udg:A, 4udg:C, 4udg:D, 4udg:E, 4udg:F, 4udi:A, 4udi:B, 4udi:C, 4udi:D, 4udi:E, 4udi:F, 4udj:A, 4udj:B, 4udj:C, 4udj:D, 4udj:E, 4udj:F, 4udk:A, 4udk:B, 4udk:C, 4udk:D, 4udk:E, 4udk:F
2 5aye:A 335 326 0.6562 0.6269 0.6442 3.78e-157 5aye:B, 5aye:C, 5aye:D, 5aye:E, 5aye:F
3 5b0s:B 355 252 0.2562 0.2310 0.3254 1.03e-32 5b0q:A, 5b0q:B, 5b0r:A, 5b0r:B, 5b0s:A
4 7fir:C 304 287 0.2750 0.2895 0.3066 1.30e-32 7fip:A, 7fip:B, 7fip:C, 7fip:D, 7fiq:C, 7fiq:B, 7fiq:A, 7fiq:D, 7fir:A, 7fir:B, 7fir:D, 7fis:C, 7fis:B, 7fis:A, 7fis:D
5 5ayc:A 386 308 0.2719 0.2254 0.2825 1.08e-21
6 3was:A 389 311 0.2469 0.2031 0.2540 3.54e-19 4kmi:A, 4kmi:B, 3was:B, 3wat:A, 3wat:B, 3wau:A, 3wau:B
7 5a7v:A 368 352 0.2656 0.2310 0.2415 4.87e-12 5a7v:B
8 3taw:A 349 342 0.2375 0.2178 0.2222 1.18e-07
9 3du4:A 448 31 0.0375 0.0268 0.3871 0.98 3du4:B
10 8iru:R 268 101 0.0844 0.1007 0.2673 6.2
11 3n6s:A 344 54 0.0406 0.0378 0.2407 8.5 5cky:O, 5co0:O, 5crj:O, 5crk:O, 3mva:O, 3mvb:O, 3n7q:A
12 7bkd:A 664 47 0.0500 0.0241 0.3404 8.7 7bkb:A, 7bkb:a, 7bkc:A, 7bkc:a, 7bkd:a, 7bke:A, 7bke:a

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218