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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IGTYNEEGVNVDLYIPRKCHATNNLITSYDHSAVQIAIANVDANGVLNGTTTTFCIAGYLRRQAESDHAINHLAISKGII
RIK

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ase:g 83 83 1.0000 1.0000 1.0000 4.36e-57
2 8ova:AR 89 83 0.8795 0.8202 0.8795 1.16e-50
3 6az1:Y 88 83 0.7590 0.7159 0.7590 6.85e-44 8rxh:SY, 8rxx:SY
4 4v3p:ST 82 69 0.4458 0.4512 0.5362 2.65e-24
5 8r6f:V 81 73 0.4578 0.4691 0.5205 6.91e-24 8ip8:cb, 8ip9:cb, 8ipa:cb
6 7qix:L 82 73 0.4337 0.4390 0.4932 2.67e-23 7qiz:BA
7 8auv:G 83 76 0.4458 0.4458 0.4868 1.22e-22 8b2l:G1
8 8c3a:X 87 78 0.4096 0.3908 0.4359 9.87e-21 8c3a:DI, 8cq7:X, 8cq7:DI, 8cqw:X, 8cqw:DI, 8cre:X, 8cre:DI, 8oeq:X, 8oeq:DI, 7pzy:W, 7q08:W, 7q0f:W, 7q0p:W, 7q0r:W, 8q5i:W
9 3j7a:Z 72 71 0.4217 0.4861 0.4930 1.48e-20 3jbn:Z, 3jbp:Z, 6okk:Z, 8tpu:SZ
10 8bqd:a 87 78 0.4096 0.3908 0.4359 3.44e-20 8bn3:D1, 8bqx:a, 8c83:a, 8cah:a, 8ccs:x, 8cf5:x, 8cku:x, 8cmj:x, 5dat:d1, 5dge:d1, 5dgv:d1, 6eml:a, 8eub:BV, 8evp:BV, 8evq:BV, 8evr:BV, 8evs:BV, 8evt:BV, 8ewb:BV, 8ewc:BV, 6fai:V, 6fyy:V, 6gq1:AL, 6gqv:AL, 6gsm:V, 6gsn:V, 8i7j:V, 5it7:V, 5it9:V, 3j77:21, 3j78:21, 3j80:V, 5juu:SB, 8k2d:SV, 8k82:SV, 5m1j:V2, 7mpi:BV, 7mpj:BV, 7n8b:BV, 5ndv:d1, 7nrd:Sa, 5obm:d1, 7osa:eS21, 7osm:eS21, 6q8y:a, 6rbd:V, 6rbe:V, 8rw1:V, 6s47:BW, 8s8d:V, 8s8e:V, 8s8f:V, 8s8i:V, 6snt:V, 6sv4:a, 6t4q:SV, 6t7t:SV, 6tnu:a, 4u3n:D1, 4u4n:D1, 4u4o:D1, 4u4y:D1, 4u50:d1, 4u53:D1, 4v6i:AT, 4v8y:AV, 4v8z:AV, 4v92:BV, 6xiq:AL, 6xir:AL, 6z6j:SV, 6z6k:SV, 7zrs:AV, 7zux:DV
11 7syl:W 83 77 0.4217 0.4217 0.4545 4.51e-19 6gz3:BV, 6olz:BV, 6om0:SV, 6om7:SV, 7oyb:V2, 7tor:AS21, 7wtw:V, 7wtz:V
12 5xxu:V 80 76 0.4217 0.4375 0.4605 1.95e-18
13 6xu8:AV 82 77 0.3855 0.3902 0.4156 1.31e-16
14 4bts:AZ 97 82 0.3735 0.3196 0.3780 7.67e-15 4bts:BZ, 4bts:CZ, 4bts:DZ, 4v5o:AZ, 4v5o:BZ
15 2p4q:A 476 45 0.1807 0.0315 0.3333 0.30
16 3ruq:A 516 55 0.2289 0.0368 0.3455 0.54 3kfb:A, 3kfb:B, 3kfb:C, 3kfb:D, 3kfb:E, 3kfb:F, 3kfb:G, 3kfb:H, 7rak:U, 7rak:A, 7rak:B, 7rak:C, 7rak:D, 7rak:E, 7rak:F, 7rak:G, 7rak:H, 7rak:I, 7rak:J, 7rak:K, 7rak:L, 7rak:M, 7rak:N, 7rak:O, 3ruq:B, 3ruq:C, 3ruq:D, 3rus:A, 3rus:B, 3rus:C, 3rus:D, 3ruv:A, 3ruv:B, 3ruv:C, 3ruv:D, 3ruw:A, 3ruw:B, 3ruw:C, 3ruw:D
17 3kfe:A 487 55 0.2289 0.0390 0.3455 0.73 3kfe:B, 3kfe:C, 3kfe:D, 3kfe:E, 3kfe:F, 3kfe:G, 3kfe:H, 3kfk:A, 3kfk:B, 3kfk:C, 3kfk:D, 5w74:A, 5w74:B, 5w74:C, 5w74:D, 5w74:E, 5w74:F, 5w74:G, 5w74:H
18 1q2v:A 518 49 0.2048 0.0328 0.3469 1.3 1q2v:B, 1q2v:C, 1q2v:D, 1q3q:A, 1q3q:B, 1q3q:C, 1q3q:D, 1q3r:A, 1q3s:A, 1q3s:B, 1q3s:C, 1q3s:D, 1q3s:E, 1q3s:F, 1q3s:G, 1q3s:H
19 4po2:A 228 58 0.2289 0.0833 0.3276 2.0 4po2:B, 4wv7:A, 4wv7:B
20 7kw7:C 511 58 0.2289 0.0372 0.3276 2.2
21 7ahv:H 235 54 0.2410 0.0851 0.3704 2.7 5egm:A, 8epc:B, 8eph:B, 8eph:D, 8epk:B, 8epk:D, 5jb8:S, 5jb9:S, 5jba:S, 5jbb:S, 5jbc:S, 3kcg:H, 3lc3:A, 3lc3:C, 3lc5:A, 6mv4:H, 8ol9:H, 1rfn:A, 6rfk:S, 5tnt:A, 2wph:S, 2wpi:S, 2wpj:S, 2wpk:S, 2wpl:S, 2wpm:S, 6x5j:A, 6x5l:A, 6x5p:A, 4yzu:A, 4z0k:A, 4zae:A
22 1a6e:A 503 45 0.1687 0.0278 0.3111 2.8
23 7kvj:A 415 35 0.1687 0.0337 0.4000 3.3
24 2j0d:B 445 35 0.1687 0.0315 0.4000 3.4 9bbb:A, 6bdh:A, 6dab:A, 8ewd:A, 8ewm:A, 8ewn:A, 8exb:A, 7ksa:A, 7kvh:B, 7kvs:B, 7uay:A, 7uaz:A, 7uf9:A, 6uni:A, 6unj:A, 6unj:B, 6unl:A, 6unm:A, 6unm:B
25 5te8:B 471 35 0.1687 0.0297 0.4000 3.4 5a1p:A, 5a1r:A, 6bcz:A, 6bd5:A, 6bd6:A, 6bd7:A, 6bd8:A, 6bdi:A, 6bdk:A, 6bdm:A, 4d6z:A, 4d75:A, 4d78:A, 4d7d:A, 6da2:A, 6da3:A, 6da5:A, 6da8:A, 6daa:A, 6dac:A, 6dag:A, 6daj:A, 6dal:A, 8dyc:A, 8ewe:A, 8ewl:A, 8ewp:A, 8ewq:A, 8ewr:A, 8ews:A, 5g5j:A, 4i3q:A, 4i4g:A, 4i4h:A, 2j0d:A, 4k9t:A, 4k9u:A, 4k9v:A, 4k9w:A, 4k9w:B, 4k9w:C, 4k9w:D, 4k9x:A, 7ks8:A, 7kvh:A, 7kvi:A, 7kvk:A, 7kvk:B, 7kvm:A, 7kvn:A, 7kvn:B, 7kvo:A, 7kvo:B, 7kvp:A, 7kvq:A, 7kvq:B, 7kvs:A, 7lxl:A, 6ma6:A, 6ma7:A, 6ma8:A, 3nxu:A, 3nxu:B, 4ny4:A, 6oo9:A, 6ooa:A, 6oob:A, 8so1:A, 8so2:A, 8spd:A, 5te8:A, 5te8:C, 3tjs:A, 1tqn:A, 3ua1:A, 7ufa:A, 7ufb:A, 7ufc:A, 7ufd:A, 7ufe:A, 7ufe:B, 7uff:B, 6une:A, 6ung:A, 6unh:A, 6unk:A, 2v0m:A, 2v0m:B, 2v0m:C, 2v0m:D, 5vc0:A, 5vcc:A, 5vcd:A, 5vce:A, 5vcg:A, 1w0e:A, 1w0f:A, 1w0g:A
26 8an2:AAA 1040 52 0.2048 0.0163 0.3269 4.3 8an3:AAA, 7zcx:AAA
27 8gk3:L 440 35 0.1566 0.0295 0.3714 5.5
28 8gk3:A 473 35 0.1566 0.0275 0.3714 5.6 8gk3:J, 8gk3:B, 8gk3:I, 8gk3:C, 8gk3:K, 8gk3:D, 8gk3:E, 8gk3:F, 8gk3:G, 8gk3:H, 7mk8:A, 7mk8:B, 7uff:A
29 4bjk:A 450 37 0.1325 0.0244 0.2973 6.3 4bjk:B, 4bjk:C, 4bjk:D, 3g1q:A, 3g1q:B, 3g1q:C, 3g1q:D, 4g3j:A, 4g3j:B, 4g3j:C, 4g3j:D, 4g7g:A, 4g7g:B, 4g7g:C, 4g7g:D, 3gw9:A, 3gw9:B, 3gw9:C, 3gw9:D, 3p99:A, 3p99:B, 3p99:C, 3p99:D, 3tik:A, 3tik:B, 3tik:C, 3tik:D, 2wv2:A, 2x2n:A, 2x2n:B, 2x2n:C, 2x2n:D
30 6ks6:z 538 17 0.1205 0.0186 0.5882 7.0 6ks6:Z, 4v81:F, 4v81:N, 4v81:f, 4v81:n, 4v8r:AZ, 4v8r:Az, 4v8r:BZ, 4v8r:Bz, 4v94:F, 4v94:N, 4v94:f, 4v94:n, 7ylw:Z, 7ylw:z, 7ylx:Z, 7ylx:z, 7yly:Z, 7yly:z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417