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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IFSFKDDNNIVALTKGKLISDVYTDKARYYPSDKVTVKIELNNELQEDFRGTIYIFYKHLESIVGKAKIQVNIKSGQKKQ
LNIFWEAPKDDFKGYLVEVYAVKGNKAIDNKNTAVDVSSDWSKFPRYGYIANFPEQSKEKSALIIEDLNKYHLNGLLFYD
WQYKHNKPLAGTVENPDPKWKDIANRDIYGQTVKDYIELAHSKNIMVANYNLMYGGYFDYVKDGAKPEWGLYKDPNHEEQ
DNHPLPHTWATDRLYLFNPANKDWQNYIFNAEKDAFRVYNFDVWHVGTLGPRGMVYDYNGNPVELSFTYADFLNNAKNAL
GKRIVCNTVNEYGLINVASGADVDFLYVEIWPPARAHYNFLKQTVDNGYNYSDGKKATVVAAYMNYGIADRSAEFNKHSV
RLTDAAIFAAGGDHIELGDTGMLSKEYFPSANLKMSESLVKAMRNYYDFLTAYENLLRDGLKESDNKIEIPGIEISNNGS
ARTVWTYAKQKDGYDVIHMINLLGIEVSNWRDDLGNYSAPPIIKDFKVKYYLENDNIKNVYLASPDINDGKVMKLQFKKK
EDSKGKYLEISVPELQYWDMIFIKKL

The query sequence (length=586) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5axh:B 587 586 1.0000 0.9983 1.0000 0.0 5axh:A
2 8iua:A 555 568 0.3805 0.4018 0.3926 8.53e-126 8iu9:A, 8iub:A
3 5x7g:A 700 472 0.2833 0.2371 0.3517 4.20e-72 5x7h:A
4 5x7g:A 700 196 0.1195 0.1000 0.3571 3.79e-30 5x7h:A
5 3wnk:A 712 383 0.2355 0.1938 0.3603 2.41e-69 3wnl:A, 3wnm:A, 3wnn:A, 3wnn:B, 3wno:A, 3wno:B, 3wnp:A, 3wnp:B
6 3wnk:A 712 197 0.1399 0.1152 0.4162 2.45e-39 3wnl:A, 3wnm:A, 3wnn:A, 3wnn:B, 3wno:A, 3wno:B, 3wnp:A, 3wnp:B
7 3vmp:A 632 642 0.3038 0.2816 0.2773 4.23e-40 3vmo:A
8 4prl:A 330 156 0.0819 0.1455 0.3077 0.092 4prl:B
9 7nl1:D 400 112 0.0495 0.0725 0.2589 3.6 8bis:C, 8bis:A, 8biu:G, 8biu:A, 8biv:A, 8biv:E, 8biw:E, 8biw:A, 8bix:C, 8bix:A, 8biz:E, 8biz:A, 7nl1:A, 7nl1:B, 7nl1:C, 7nl1:E, 7nl1:F, 7nl1:G, 7nl1:H
10 7lzh:A 798 48 0.0273 0.0201 0.3333 8.7 7lzh:B, 7lzh:C, 7lzh:D, 7lzi:A, 7lzi:B, 7lzi:C, 7lzi:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218