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BioLiP
>protein
IFEEAASFRSYQSKLGRDGRASAATATLTTKIRIFVPATNSPELRWELTLFALDVIRSPSAAESMKVGAAFTLISMYSER
PGALIRSLLNDPDIEAVIIDVGSMVNGIPVMERRGDKAQEEMEGLMRILKTARDSSKGKTPFVDSRAYGLRITDMSTLVS
AVITIEAQIWILIAKAVTAPDTAEESETRRWAKYVQQKRVNPFFALTQQWLTEMRNLLSQSLSVRKFMVEILIEVKKGGS
AKGRAVEIISDIGNYVEETGMAGFFATIRFGLETRYPALALNEFQSDLNTIKSLMLLYREIGPRAPYMVLLEESIQTKFA
PGGYPLLWSFAMGVATTIDRSMGALNINRGYLEPMYFRLGQKSARHHA

The query sequence (length=368) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7nt5:B 395 368 1.0000 0.9316 1.0000 0.0 8c4h:C, 8c4h:D, 8c4h:E, 8c4h:F, 8c4h:G, 8c4h:H, 8c4h:I, 8c4h:J, 8c4h:K, 8c4h:L, 8c4h:M, 8c4h:N, 8c4h:A, 8c4h:B, 8c4h:a, 8c4h:b, 8c4h:c, 8c4h:d, 8c4h:e, 8c4h:f, 8c4h:g, 8c4h:h, 8c4h:i, 8c4h:j, 8c4h:k, 8c4h:l, 8c4h:m, 8c4h:n, 8cbw:A, 7nt5:A, 7nt5:C, 7nt5:D, 7nt5:E, 7nt5:F, 7nt5:G, 7nt5:H, 7nt5:I, 7nt5:J, 7nt5:K, 7nt5:L, 7nt5:M, 7nt6:H, 7nt6:J, 7nt6:K, 7nt6:L, 7nt6:M, 7nt6:N, 7nt6:O, 7nt6:C, 7nt6:D, 7nt6:E, 7nt6:F, 7nt6:G
2 7oi3:E 394 304 0.3560 0.3325 0.4309 4.17e-86
3 6h5q:B 381 336 0.3723 0.3596 0.4077 6.08e-84 6h5s:C, 4uft:B
4 6jc3:A 391 363 0.3125 0.2941 0.3168 1.14e-61
5 4xjn:A 395 343 0.3016 0.2810 0.3236 5.34e-56 5wkn:A, 5wkn:B, 4xjn:B, 4xjn:C, 4xjn:D, 4xjn:E, 4xjn:F, 4xjn:G, 4xjn:H, 4xjn:I, 4xjn:J, 4xjn:K, 4xjn:L, 4xjn:M
6 7ozr:A 403 355 0.2935 0.2680 0.3042 2.75e-53 7ewq:A, 7exa:A
7 7ev8:A 328 198 0.1984 0.2226 0.3687 1.20e-38
8 6m7d:A 412 216 0.1875 0.1675 0.3194 1.19e-33
9 5z9w:A 388 76 0.0516 0.0490 0.2500 0.13 6nut:A, 4ypi:C, 4ypi:A, 4ypi:B, 4ypi:D
10 7f1m:A 394 111 0.0734 0.0685 0.2432 0.23 7f1m:B, 5f5o:A, 5f5o:C, 5f5o:E, 5xsq:A, 5xsq:C, 5xsq:E
11 3cnl:A 233 87 0.0652 0.1030 0.2759 0.29 3cnn:A, 3cno:A
12 7ypw:A 388 68 0.0598 0.0567 0.3235 0.51 7yr8:A
13 8tj5:T 801 57 0.0435 0.0200 0.2807 8.1 8tj5:R
14 7d1b:A 302 101 0.0571 0.0695 0.2079 8.6
15 5mg5:L 396 56 0.0489 0.0455 0.3214 9.4 5mg5:C, 5mg5:O, 5mg5:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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