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BioLiP
>protein
IELHRKRYGYRLDYHEKKRKKESREAHERSKKAKK

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fkz:NF 175 35 1.0000 0.2000 1.0000 3.48e-17
2 8fkx:NF 209 35 1.0000 0.1675 1.0000 5.01e-17 8fkr:NF, 8fks:NF, 8fkt:NF, 8fku:NF, 8fky:NF
3 8fl2:NF 233 35 1.0000 0.1502 1.0000 7.39e-17 8fkv:NF, 8fkw:NF, 8fl3:NF, 8fl4:NF, 8ie3:R, 8ink:J, 8ipd:J, 8ipx:J, 8ipy:J
4 8ir1:J 259 35 1.0000 0.1351 1.0000 1.07e-16 8fl0:NF, 8fl6:NF, 8fl7:NF, 8fl9:NF, 8idy:v, 8ine:s, 8inf:s, 8ir3:J
5 7ohr:r 159 35 0.5429 0.1195 0.5429 4.37e-05
6 6elz:r 176 35 0.5429 0.1080 0.5429 4.63e-05 6em5:r, 7nac:r, 7r7a:r, 7u0h:r
7 8v87:r 214 35 0.5429 0.0888 0.5429 4.85e-05 8v84:r
8 8v83:r 184 35 0.5429 0.1033 0.5429 4.86e-05
9 6n8j:r 204 35 0.5429 0.0931 0.5429 5.07e-05
10 7bt6:r 230 35 0.5429 0.0826 0.5429 5.33e-05 7btb:r, 6em1:r, 6ft6:r, 8hfr:xd, 3jct:r, 6m62:r, 7oh3:r, 7ohp:r, 7ohq:r, 7ohs:r, 7oht:r, 7ohu:r, 7ohv:r, 7ohw:r, 7ohy:r, 7r7c:r, 7ug6:r, 7uoo:r, 7uqb:r, 7uqz:r, 7v08:r, 6ylg:r, 6ylh:r, 6ylx:r, 6yly:r, 7z34:r
11 7of1:r 99 35 0.5429 0.1919 0.5429 5.97e-05
12 8i9w:CK 238 34 0.5143 0.0756 0.5294 2.95e-04 8i9t:CK, 8i9v:CK, 8i9x:CK, 8i9y:CK, 8i9z:CK, 8ia0:CK, 8pv1:CK, 8pv2:CK, 8pv3:CK, 8pv4:CK, 8pv5:CK, 8pv6:CK, 8pv7:CK, 8pv8:CK, 8pvk:CK, 8pvl:CK
13 8esq:r 166 35 0.4857 0.1024 0.4857 0.012 8esr:r, 8etc:r, 8etg:r, 8eti:r, 8etj:r, 8eup:r, 8euy:r, 8ev3:r
14 6yvb:C 324 19 0.2571 0.0278 0.4737 3.8 6ypo:A, 6ypo:B, 6ys6:B, 6ys6:C, 6ysp:A, 6ysp:B, 6ysp:C, 6yvb:A, 6yvb:B, 6yvb:D, 6yvb:E, 6yvb:F, 6yw9:A, 6yw9:B, 6yw9:C, 6ywj:A, 6ywj:B
15 6vgd:A 98 13 0.2000 0.0714 0.5385 7.0 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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