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BioLiP
>protein
IDKITYPTRIGAVVFPHKKHQDALGECRGCHEKGPGRIDGFDKVMAHGKGCKGCHEEMKIGPVRCGDCHKGG

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3h33:A 72 72 1.0000 1.0000 1.0000 1.90e-47
2 4haj:A 71 69 0.6250 0.6338 0.6522 2.50e-27 4hb6:A, 4hb8:A, 4hbf:A, 4hc3:A, 4hdl:A, 2ldo:A, 2lzz:A, 2mz9:A, 2n91:A, 1os6:A, 3sel:X, 3sj0:X, 3sj1:X, 3sj4:X
3 3bxu:A 71 69 0.5694 0.5775 0.5942 6.65e-25 3bxu:B
4 3h34:A 70 70 0.5139 0.5286 0.5286 8.08e-20
5 3h4n:B 69 68 0.4583 0.4783 0.4853 1.32e-14 3h4n:A
6 1ehj:A 68 68 0.4306 0.4559 0.4559 1.83e-12 1f22:A, 1hh5:A, 1kwj:A, 1l3o:A, 1lm2:A, 1new:A
7 3ov0:A 318 68 0.3750 0.0849 0.3971 0.010 3oue:A, 3ouq:A, 1rwj:A
8 3ov0:A 318 70 0.3333 0.0755 0.3429 0.38 3oue:A, 3ouq:A, 1rwj:A
9 3ov0:A 318 58 0.2639 0.0597 0.3276 0.67 3oue:A, 3ouq:A, 1rwj:A
10 3cao:A 103 51 0.2778 0.1942 0.3922 0.012 3car:A
11 1z1n:X 516 71 0.3056 0.0426 0.3099 0.044
12 2e84:A 513 64 0.2917 0.0409 0.3281 0.053
13 2e84:A 513 74 0.3056 0.0429 0.2973 1.7
14 1qo8:A 564 64 0.2639 0.0337 0.2969 0.10 1qo8:D
15 1zzh:B 308 40 0.1667 0.0390 0.3000 0.16 1zzh:A, 1zzh:C, 1zzh:D
16 1aqe:A 110 91 0.3472 0.2273 0.2747 0.18 1czj:A
17 2bq4:B 115 25 0.1667 0.1043 0.4800 0.37 2bq4:A
18 1s0u:A 391 67 0.2639 0.0486 0.2836 0.53
19 1gws:A 503 65 0.2778 0.0398 0.3077 0.55 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
20 1gws:A 503 49 0.2222 0.0318 0.3265 7.5 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
21 1gws:A 503 19 0.1250 0.0179 0.4737 8.9 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
22 2c1v:A 335 34 0.1528 0.0328 0.3235 0.79 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
23 1duw:A 289 51 0.2222 0.0554 0.3137 5.4
24 2ccy:A 127 17 0.1389 0.0787 0.5882 6.5 2ccy:B
25 8gy2:B 433 35 0.1667 0.0277 0.3429 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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