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BioLiP Library
>protein
IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYT
ISLNIDCSRV

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1bwo:A 90 90 1.0000 1.0000 1.0000 7.42e-62 1bwo:B, 1cz2:A
2 3gsh:A 91 90 0.7222 0.7143 0.7222 1.72e-45 3gsh:B, 1jtb:A, 1mid:A
3 1rzl:A 91 90 0.6111 0.6044 0.6111 1.20e-36 1uvc:A, 1uvc:B
4 1fk6:A 93 91 0.5889 0.5699 0.5824 2.64e-34 1fk7:A
5 5lqv:A 93 90 0.5556 0.5376 0.5556 3.39e-31
6 6iwo:A 92 90 0.4222 0.4130 0.4222 6.19e-22 6iwo:B, 6iwp:A, 5tvi:W, 7w9a:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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