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BioLiP
>protein
IAHWYCGHKFRHRFMRDKRFHPSLQASHDARNRFSKRRHFKTNRWNYQQAYRDMP

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hiv:Da 55 55 1.0000 1.0000 1.0000 1.63e-36 6hiw:Da, 6hiy:Da, 7pua:Da, 7pub:Da
2 4e51:A 415 18 0.1636 0.0217 0.5000 1.3 4e51:B
3 5xgd:A 548 32 0.2000 0.0201 0.3438 1.8 8pps:A, 8pps:B, 5xge:A
4 8esq:q 341 13 0.1818 0.0293 0.7692 5.8
5 8esr:q 260 13 0.1818 0.0385 0.7692 6.2
6 8fkt:SY 378 27 0.2182 0.0317 0.4444 6.4 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
7 2f3o:A 773 20 0.1455 0.0103 0.4000 8.0 2f3o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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