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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHDDTEFQHPCF
LRGQEQLLENIKRKV

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dcj:B 110 103 0.9895 0.8545 0.9126 2.62e-65 5d5u:B, 5d5v:B, 5d5v:D, 7dcj:A, 7dcs:A, 7dcs:B, 7dcs:C, 7dcs:D, 7dcs:E, 7dcs:F, 7dct:A, 7dct:B, 7dct:C, 7dct:D, 7dct:E, 7dct:F, 5hdn:A, 5hdn:C
2 7dcu:A 101 94 0.7053 0.6634 0.7128 2.59e-45 7dci:A, 7dcu:C
3 5d8k:B 106 106 0.7263 0.6509 0.6509 7.08e-45 5d8l:B, 5d8l:D, 5d8l:F, 5d8l:H, 7dcu:B
4 5d5x:B 99 97 0.4632 0.4444 0.4536 4.60e-25 5d5w:B, 5d5x:E
5 1fyk:A 88 66 0.4105 0.4432 0.5909 1.65e-23 3hts:B
6 1u2g:B 359 37 0.1158 0.0306 0.2973 2.2 2fr8:A
7 1f8g:A 382 37 0.1158 0.0288 0.2973 2.2 1f8g:B, 1f8g:C, 1f8g:D, 2frd:A, 2frd:B, 2fsv:A, 1hzz:A, 1l7e:A, 1l7e:D, 1nm5:A, 1nm5:B, 2oo5:A, 2oo5:B, 2oor:A, 2oor:B, 1ptj:A, 1u28:A, 1u28:B, 1u2d:A, 1u2d:B, 1u2g:A, 1xlt:A, 1xlt:B, 1xlt:D, 1xlt:E, 1xlt:H, 1xlt:G
8 7yni:A 566 31 0.1158 0.0194 0.3548 2.7
9 7sla:A 585 31 0.1158 0.0188 0.3548 2.7 7sl8:A
10 7wmv:A 602 31 0.1158 0.0183 0.3548 2.7
11 7oya:a1 147 46 0.1684 0.1088 0.3478 5.6 7oyb:a1
12 3ziu:A 621 50 0.1368 0.0209 0.2600 6.4 3ziu:B
13 8b9z:E 214 18 0.0842 0.0374 0.4444 7.8 8ba0:E, 8esw:V2, 8esz:V2
14 4bqa:A 132 63 0.1684 0.1212 0.2540 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417