Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HSPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLL
VDADIGFGSSAFNVARTVKSIAKAGAAALHIEDQVAIVSKEEMVDRIRAAVDARTDPNFVIMARTDALAVEGLEAALDRA
QAYVDAGADMLFPEAITELSMYRRFADVAQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVL
RQEGTQKNVIDIMQTRNELYESINYYQF

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1mum:A 289 279 0.9142 0.8478 0.8781 5.11e-179 1o5q:A, 1o5q:B, 1o5q:C, 1o5q:D, 1xg3:A, 1xg3:B, 1xg3:C, 1xg3:D
2 6t4v:C 277 267 0.7724 0.7473 0.7753 2.92e-154 6t4v:A, 6t4v:B, 6t4v:D, 6t5m:C, 6t5m:A, 6t5m:D, 6t5m:B
3 4iqd:A 290 273 0.4366 0.4034 0.4286 9.28e-67 4iqd:B
4 3fa3:B 302 247 0.3470 0.3079 0.3765 4.48e-38 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
5 1zlp:B 285 261 0.3246 0.3053 0.3333 3.08e-35 1zlp:A
6 3m0j:A 297 260 0.3022 0.2727 0.3115 5.43e-27 3lye:A, 3m0k:A
7 1m1b:A 291 268 0.2948 0.2715 0.2948 5.66e-23 1m1b:B, 1pym:A, 1pym:B
8 3b8i:A 284 253 0.2836 0.2676 0.3004 3.78e-22 3b8i:B, 3b8i:C, 3b8i:D, 3b8i:E, 3b8i:F
9 2dua:A 283 272 0.3246 0.3074 0.3199 1.10e-18 2hjp:A
10 5unc:A 289 168 0.2239 0.2076 0.3571 9.96e-17 5unc:B, 5unc:C, 5unc:D
11 2ze3:A 275 193 0.2201 0.2145 0.3057 3.25e-13
12 1igw:C 416 269 0.2575 0.1659 0.2565 1.48e-11 1igw:B, 1igw:D
13 1igw:A 396 241 0.2500 0.1692 0.2780 6.05e-11
14 7cmy:C 417 300 0.2724 0.1751 0.2433 1.12e-09
15 6lrt:A 423 265 0.2612 0.1655 0.2642 3.91e-09 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
16 6c4a:A 428 253 0.2537 0.1589 0.2688 5.85e-09 6c4a:B, 6c4a:C, 6c4a:D, 6c4a:E, 6c4a:F, 6c4a:G, 6c4a:H, 6c4c:A, 6c4c:B, 6c4c:C, 6c4c:D, 6c4c:E, 6c4c:F, 6c4c:G, 6c4c:H, 7cp1:A, 7cp1:B, 5dql:A, 5dql:B, 5dql:C, 5dql:D, 1f61:A, 1f61:B, 1f8i:A, 1f8i:B, 1f8i:C, 1f8i:D, 1f8m:A, 1f8m:B, 1f8m:C, 1f8m:D, 7rb1:A, 7rb1:B, 7rb1:C, 7rb1:D, 6vb9:A, 6vb9:B, 6vb9:C, 6vb9:D, 6wsi:A, 6wsi:B, 6wsi:C, 6wsi:D, 6xpp:A, 6xpp:B, 6xpp:C, 6xpp:D
17 7rbx:C 425 196 0.2201 0.1388 0.3010 8.02e-09 7rbx:A, 7rbx:B, 7rbx:D
18 4lsb:B 278 183 0.2276 0.2194 0.3333 2.44e-07 4lsb:A
19 8z1r:B 516 183 0.1754 0.0911 0.2568 0.002 8z1r:A
20 7ebe:A 544 113 0.1306 0.0643 0.3097 0.003 7ebe:B, 7ebe:C, 7ebe:D
21 5e9f:D 453 96 0.1157 0.0684 0.3229 0.005
22 5e9f:B 501 96 0.1157 0.0619 0.3229 0.006 5e9f:C, 5e9g:C
23 5e9h:A 518 103 0.1194 0.0618 0.3107 0.011
24 5e9g:D 486 103 0.1157 0.0638 0.3010 0.039
25 5e9g:B 525 103 0.1157 0.0590 0.3010 0.041 5e9f:A, 5e9g:A
26 1jba:A 189 71 0.0746 0.1058 0.2817 0.33
27 6g1o:A 486 82 0.0896 0.0494 0.2927 0.85
28 3neh:A 309 67 0.0784 0.0680 0.3134 2.3 3neh:B
29 6n8e:A 1332 191 0.1716 0.0345 0.2408 3.8
30 8szu:A 366 53 0.0709 0.0519 0.3585 5.3 8szt:B, 8szt:A, 8szt:C, 8szt:D, 8szu:B
31 1xfu:A 735 43 0.0485 0.0177 0.3023 8.6 1k90:A, 1k90:C, 1lvc:A, 1lvc:C, 1pk0:A, 1pk0:C, 1s26:A, 1s26:C, 1sk6:C, 1xfu:B, 1xfu:C, 1xfu:D, 1xfu:E, 1xfu:F, 1xfv:A, 1xfv:B, 1xfv:C, 1xfv:D, 1xfv:E, 1xfv:F, 1xfw:A, 1xfw:B, 1xfw:C, 1xfw:D, 1xfw:E, 1xfw:F, 1xfx:A, 1xfx:B, 1xfx:C, 1xfx:D, 1xfx:E, 1xfx:F, 1xfy:A, 1xfy:B, 1xfy:C, 1xfy:D, 1xfy:E, 1xfy:F, 1xfz:A, 1xfz:B, 1xfz:C, 1xfz:D, 1xfz:E, 1xfz:F, 1y0v:A, 1y0v:B, 1y0v:C, 1y0v:D, 1y0v:E, 1y0v:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218