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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HSEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPRRPWVLGKVMEKEYCQAKKAQNRFKVPLG
TKFYRVKAVSWN

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8yfk:G 99 99 0.9891 0.9192 0.9192 2.82e-62 7czm:A, 7d0e:A, 8yfk:A, 8yfk:C, 8yfk:E, 8yfl:A, 8yfl:C, 8yfm:A, 8yfm:D, 8yfn:A, 8yfn:C
2 7czm:B 94 92 0.9674 0.9468 0.9674 2.32e-61
3 4d9u:A 307 30 0.1413 0.0423 0.4333 0.074 4d9t:A, 4jg6:A, 4jg7:A, 4jg8:A, 4m8t:A, 4mao:A, 5o1s:A
4 5vdk:A 260 36 0.1413 0.0500 0.3611 0.12
5 4o2z:A 363 33 0.1304 0.0331 0.3636 1.9
6 3ml1:B 109 27 0.1413 0.1193 0.4815 2.1 3o5a:B
7 2ewa:A 330 74 0.2065 0.0576 0.2568 2.2 4e8a:A, 4eh5:A, 1kv2:A, 5ml5:A, 5n63:A, 5omh:A, 2yis:A, 2yiw:A, 3zsi:A, 6zwp:A
8 7m0r:E 458 17 0.1087 0.0218 0.5882 2.5 7m0r:F
9 4gz9:A 562 17 0.1087 0.0178 0.5882 2.9 9eou:A, 4gza:H, 2orz:A, 2qqm:A
10 5wvd:A 241 33 0.1304 0.0498 0.3636 3.1
11 4psx:B 361 38 0.1087 0.0277 0.2632 5.0 4psx:E
12 2z2w:A 261 57 0.1739 0.0613 0.2807 5.2 3bi6:A, 3biz:A, 3cqe:A, 3cr0:A, 2in6:A, 2io6:A, 5vc6:A, 5vda:A, 1x8b:A
13 5awm:A 345 87 0.2283 0.0609 0.2414 5.2
14 6z55:A 358 51 0.1413 0.0363 0.2549 5.4 9ez3:A, 6ft7:A, 6ft7:B, 6fyp:A, 6fyr:A, 6khf:A, 3raw:A, 3raw:B, 6rct:A, 6rct:B, 2wu6:A, 2wu7:A, 6ytw:A, 6ytw:B, 6yty:A, 6yu1:a, 6yu1:c, 6z2v:A, 6z51:A, 6z52:A, 6z52:B, 6z53:A, 6z54:A, 6z55:B
15 7sqc:C2 1498 34 0.1304 0.0080 0.3529 5.9 7sqc:C0, 7sqc:C1, 7sqc:C3
16 7n6q:A 375 38 0.1413 0.0347 0.3421 6.9 7n6q:B, 7n6q:C, 7n6q:D, 7n6r:A, 7n6r:B, 7n6r:C, 7n6r:D
17 8d41:A 307 26 0.0870 0.0261 0.3077 8.6 8d41:B
18 8i0w:W 440 35 0.1304 0.0273 0.3429 8.6 5yzg:W
19 7t80:A 216 28 0.1413 0.0602 0.4643 9.0 7t80:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218