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BioLiP
>protein
HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1akh:B 78 56 1.0000 0.7179 1.0000 5.34e-36 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
2 1mnm:C 77 56 1.0000 0.7273 1.0000 6.06e-36 1mnm:D
3 1lfu:P 82 49 0.2857 0.1951 0.3265 7.79e-06 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4xrm:B 64 51 0.2679 0.2344 0.2941 3.82e-05 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
5 6fqp:A 67 51 0.3214 0.2687 0.3529 3.04e-04 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
6 4egc:A 539 46 0.2679 0.0278 0.3261 4.63e-04
7 1zq3:P 68 53 0.3214 0.2647 0.3396 0.002
8 3cmy:A 60 49 0.2857 0.2667 0.3265 0.22
9 5eea:G 63 53 0.3393 0.3016 0.3585 0.25 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
10 3a01:A 78 51 0.3036 0.2179 0.3333 0.60 3a01:E
11 2lkx:A 68 51 0.2857 0.2353 0.3137 0.69
12 3d1n:I 150 50 0.2500 0.0933 0.2800 0.88 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
13 1ig7:A 58 53 0.3036 0.2931 0.3208 2.0
14 5zjr:A 64 35 0.2321 0.2031 0.3714 2.1 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
15 3rkq:A 58 53 0.3036 0.2931 0.3208 2.1 3rkq:B
16 8jw0:l 253 35 0.1786 0.0395 0.2857 2.4
17 4rbo:A 55 33 0.2143 0.2182 0.3636 2.6 4rbo:D
18 2ld5:A 67 53 0.3036 0.2537 0.3208 3.4
19 2f4m:A 295 18 0.1786 0.0339 0.5556 3.4 2f4o:A
20 2me6:A 71 51 0.3036 0.2394 0.3333 3.5
21 5flv:M 229 53 0.3036 0.0742 0.3208 3.8 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
22 7xrc:C 134 45 0.2679 0.1119 0.3333 3.8 2xsd:C
23 8pna:A 67 31 0.1964 0.1642 0.3548 4.3 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
24 4j19:A 77 72 0.4107 0.2987 0.3194 4.7 4j19:B
25 1nk2:P 77 53 0.3214 0.2338 0.3396 5.8 1nk3:P
26 1otw:A 255 18 0.1607 0.0353 0.5000 6.1 3hlx:A, 3hlx:D, 3hml:A, 3hml:B, 3hnh:A, 4ny7:A, 4ny7:B, 1otw:B
27 6es3:K 72 33 0.2143 0.1667 0.3636 6.2 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
28 1b72:A 68 35 0.2143 0.1765 0.3429 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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