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BioLiP
>protein
HNMDYFKYHNMRPPFTYATLIRWAILEAPERQRTLNEIYHWFTRMFAYFRNHPATWKNAIRHNLSLHKCFVRVESEKGAV
WTVDEFE

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7tdw:A 90 86 0.9885 0.9556 1.0000 5.86e-62 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
2 3qrf:G 82 77 0.8506 0.9024 0.9610 9.91e-53 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
3 2a07:J 83 77 0.7011 0.7349 0.7922 4.93e-42 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
4 6ncm:A 91 73 0.3678 0.3516 0.4384 2.83e-21 6nce:A, 6ncm:B
5 7cby:C 100 78 0.4138 0.3600 0.4615 3.84e-21
6 6ako:C 97 78 0.4023 0.3608 0.4487 1.44e-20 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
7 8vfy:O 102 77 0.3793 0.3235 0.4286 6.14e-20 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
8 2c6y:A 98 80 0.4023 0.3571 0.4375 2.69e-19 2c6y:B
9 2hdc:A 97 79 0.3793 0.3402 0.4177 3.44e-19
10 7yze:A 87 81 0.3563 0.3563 0.3827 6.49e-19 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
11 8bzm:E 95 78 0.4023 0.3684 0.4487 2.96e-18 8bzm:I, 8bzm:A, 8bzm:J
12 7vov:A 93 79 0.3678 0.3441 0.4051 3.14e-18 7vou:C, 7vov:B
13 6el8:A 89 74 0.3448 0.3371 0.4054 6.64e-17 6el8:D
14 2uzk:A 97 67 0.3678 0.3299 0.4776 2.97e-16 2uzk:C
15 3l2c:A 85 66 0.3793 0.3882 0.5000 5.37e-16
16 3g73:B 95 75 0.3908 0.3579 0.4533 6.00e-16 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
17 7yza:A 122 79 0.3218 0.2295 0.3544 1.47e-15 7yz7:A, 7yzc:A, 7yzd:A
18 3co6:C 91 67 0.3563 0.3407 0.4627 1.53e-15 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
19 7yzg:A 121 79 0.3103 0.2231 0.3418 1.10e-13
20 7yzb:A 125 79 0.3448 0.2400 0.3797 2.20e-13
21 7y4i:A 822 87 0.2299 0.0243 0.2299 0.13 8dti:A, 8dti:B
22 6hpd:A 955 45 0.1379 0.0126 0.2667 0.65
23 1avp:A 204 51 0.1724 0.0735 0.2941 1.3 5fgy:A, 1nln:A, 4pid:A, 4pie:A
24 3bg6:A 577 27 0.1264 0.0191 0.4074 1.7 3bg6:B, 3bg6:C, 3bg6:D, 3bg6:E, 3bg6:F, 3bg6:G, 3bg6:H, 3bg7:A, 3bg7:B, 3bg7:C, 3bg7:D, 3bg7:E, 3bg7:F, 3bg7:G, 3bg7:H, 3bly:A, 2f5v:A, 2f6c:A, 3fdy:A, 2igk:A, 2igk:B, 2igk:C, 2igk:D, 2igk:E, 2igk:F, 2igk:G, 2igk:H, 2igm:A, 2igm:B, 2igm:D, 2igm:C, 2igm:E, 2igm:F, 2igm:G, 2igm:H, 2ign:A, 2ign:B, 2ign:D, 2ign:C, 2ign:E, 2ign:F, 2ign:H, 2ign:G, 2igo:A, 2igo:B, 2igo:D, 2igo:C, 2igo:E, 2igo:F, 2igo:H, 2igo:G, 3k4b:A, 3k4c:A, 3k4c:B, 3k4c:C, 3k4c:D, 3k4j:A, 3k4k:A, 3k4l:A, 3k4l:B, 3k4m:A, 3k4m:B, 3k4m:C, 3k4m:D, 3k4m:E, 3k4m:F, 3k4m:G, 3k4m:H, 3k4n:A, 3k4n:B, 3lsh:A, 3lsh:B, 3lsh:C, 3lsh:D, 3lsi:A, 3lsi:B, 3lsk:A, 3lsk:B, 3lsk:C, 3lsk:D, 3lsm:A, 3lsm:B, 4moe:A, 4moe:B, 4moe:C, 4moe:D, 4mof:A, 4mog:A, 4moh:A, 4moi:A, 4moi:B, 4moj:A, 4moj:B, 4moj:C, 4moj:D, 4mok:A, 4mok:B, 4mok:C, 4mok:D, 4mol:A, 4mol:B, 4mol:C, 4mol:D, 4mom:A, 4mom:B, 4mom:C, 4mom:D, 4moo:A, 4mop:A, 4mop:B, 4mop:C, 4mop:D, 4moq:A, 4moq:B, 4mor:A, 4mor:B, 4mor:C, 4mor:D, 4mos:A, 3pl8:A, 1tt0:A, 1tt0:B, 1tt0:C, 1tt0:D, 1tzl:A, 1tzl:B, 1tzl:C, 1tzl:D, 1tzl:E, 1tzl:F, 1tzl:G, 1tzl:H
25 5oql:E 331 27 0.1494 0.0393 0.4815 2.5 6rxt:UF, 6rxu:UF, 6rxv:UF, 6rxy:UF, 6rxz:UF
26 2efe:A 246 26 0.1034 0.0366 0.3462 3.9 2efe:C, 4g01:A
27 5eke:C 307 40 0.1494 0.0423 0.3250 5.6 5eke:A, 5eke:B, 5eke:D, 5ekp:C, 5ekp:A, 5ekp:B, 5ekp:D
28 2j0k:A 598 21 0.1149 0.0167 0.4762 6.3 4gu9:A, 4kab:A, 4kao:A, 1mp8:A, 4q9s:A
29 6ty4:A 621 21 0.1149 0.0161 0.4762 6.5 4brx:A, 3bz3:A, 4c7t:A, 4d4s:B, 4d4v:B, 4d58:B, 4d5h:A, 4ebv:A, 4ebw:A, 2etm:A, 2etm:B, 6gcr:A, 6gcw:A, 6gcw:B, 6gcx:A, 4gu6:A, 4gu6:B, 4gu9:B, 4i4e:A, 4i4f:A, 6i8z:A, 2ijm:A, 2ijm:B, 2j0j:A, 2j0k:B, 2j0l:A, 2j0m:B, 2jkk:A, 2jkm:A, 2jko:A, 2jkq:A, 4k8a:A, 4k8a:B, 4k9y:A, 4kab:B, 4kao:B, 7pi4:DDD, 3pxk:A, 3pxk:B, 6ty4:B, 6yoj:A, 6yq1:A, 6yq1:B, 6yq1:C, 6yq1:D, 6yr9:A, 6yr9:B, 6yr9:C, 6yr9:D, 6yt6:A, 6yt6:B, 6yvs:A, 6yvs:B, 6yvs:C, 6yvs:D, 6yvy:A, 6yvy:B, 6yvy:C, 6yvy:D, 6yxv:A, 6yxv:B, 6yxv:C, 6yxv:D
30 6wpu:A 439 25 0.1034 0.0205 0.3600 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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