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BioLiP
>protein
HNLIERRRRFNINDRIKELGTLIPKSMRWNKGTILKASVDYIRKLQREQQRAKDLEN

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7d8t:A 199 61 0.9825 0.2814 0.9180 6.35e-33 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
2 7f09:C 67 48 0.7544 0.6418 0.8958 7.92e-25
3 1am9:C 82 54 0.4211 0.2927 0.4444 9.37e-09 1am9:D, 1am9:A, 1am9:B
4 8ia3:E 111 60 0.4386 0.2252 0.4167 1.02e-06 8ia3:A, 8ia3:B, 8ia3:F
5 7f2f:B 94 57 0.4211 0.2553 0.4211 3.36e-06 7f2f:A
6 1an4:A 65 57 0.4035 0.3538 0.4035 1.09e-05 1an4:B
7 8osk:M 316 44 0.3333 0.0601 0.4318 1.32e-05 4h10:B, 8osl:M, 8osl:O
8 8ow1:B 116 46 0.3509 0.1724 0.4348 1.12e-04 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
9 8hov:A 87 74 0.3684 0.2414 0.2838 1.73e-04 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
10 4zpr:A 235 58 0.3333 0.0809 0.3276 0.003
11 8osl:N 290 46 0.2982 0.0586 0.3696 0.008 4h10:A, 8osk:N, 8osl:P
12 5gnj:B 77 46 0.2456 0.1818 0.3043 0.013 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
13 1hlo:A 80 49 0.2632 0.1875 0.3061 0.016
14 5nj8:D 134 49 0.2982 0.1269 0.3469 0.017
15 5eyo:C 88 49 0.2632 0.1705 0.3061 0.018 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
16 7xi4:A 283 50 0.2982 0.0601 0.3400 0.022 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
17 7xi3:A 287 50 0.2807 0.0557 0.3200 0.028
18 5i50:B 96 58 0.3509 0.2083 0.3448 0.13 5i50:A, 1nkp:A, 1nkp:D
19 8h1c:B 983 27 0.1754 0.0102 0.3704 1.6 8h1c:A, 7xjz:A, 7xk0:A, 7xk1:A, 7xk1:C
20 7sqc:1A 1639 36 0.2281 0.0079 0.3611 4.3
21 7sqc:1B 1660 36 0.2281 0.0078 0.3611 4.3
22 7sqc:1C 1700 36 0.2281 0.0076 0.3611 4.3 7sqc:1D
23 1nlw:A 79 55 0.2807 0.2025 0.2909 4.3 1nlw:D
24 2ypa:A 67 46 0.2807 0.2388 0.3478 6.1 2ypb:A
25 2x2t:A 152 31 0.2105 0.0789 0.3871 7.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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