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BioLiP
>protein
HMTPIIHLKGDRNSLKCLRYRLRKHSDHYRDISSTWHWTEKTGILTVTYHSETQRTKFLNTVAIPDSVQILVGYMT

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jj4:B 76 76 1.0000 1.0000 1.0000 5.42e-53 1jj4:A
2 2ayb:A 87 80 0.5263 0.4598 0.5000 5.80e-22 2ayb:B, 2ayg:A, 2ayg:B
3 2bop:A 85 71 0.2763 0.2471 0.2958 1.62e-06
4 5t8s:A 388 43 0.1711 0.0335 0.3023 1.1 5t8s:B, 5t8t:A, 5t8t:B
5 7pay:A 329 40 0.1711 0.0395 0.3250 1.3 7pax:A, 7pb0:A, 7pb1:A, 6w2l:A, 6z1n:A
6 3qsz:B 179 46 0.1579 0.0670 0.2609 4.2 3qsz:A
7 3ial:B 505 23 0.1184 0.0178 0.3913 5.7 3ial:A
8 6kbn:C 504 30 0.1579 0.0238 0.4000 6.4 6kbm:A, 6kbn:A
9 5fg3:A 598 55 0.1974 0.0251 0.2727 8.2 5yt0:A
10 5ud5:A 86 35 0.1579 0.1395 0.3429 9.5 5ud5:B, 5v6x:A, 5v6x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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