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BioLiP
>protein
HMQLRLYNLRVRGLPSDLMGITDGYVKVFCGSANLGETSVNHNNANPWWTEEFSHFKAQENDILRLEVHDEDTFFDDLLG
VCQRQIKVGTHEHDCYLKEGGTLHYMYTLSV

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3w57:A 111 111 1.0000 1.0000 1.0000 3.13e-82 3w57:B
2 3nsj:A 530 100 0.3514 0.0736 0.3900 1.10e-09 7pag:A, 5ug7:A, 4y1s:A, 4y1t:A
3 7atp:A 129 66 0.2072 0.1783 0.3485 7.24e-05
4 4lt7:A 128 75 0.2342 0.2031 0.3467 7.53e-05 2k3h:A, 4np9:A, 4ns0:A
5 4lcv:C 129 74 0.2252 0.1938 0.3378 8.90e-05
6 6nyt:A 135 97 0.2883 0.2370 0.3299 0.001
7 5a52:A 154 77 0.2162 0.1558 0.3117 0.002
8 5a50:A 165 83 0.2523 0.1697 0.3373 0.002 5a4x:A, 5a4x:B, 5a50:B, 5a51:A, 5a51:B, 4v29:A, 4v29:B
9 5ue8:A 847 95 0.2432 0.0319 0.2842 0.020 5ue8:B, 1y8f:A
10 6ank:B 263 73 0.2072 0.0875 0.3151 0.021 6anj:A, 6ank:A, 6lcy:A, 3n5a:A
11 5cch:E 280 86 0.2523 0.1000 0.3256 0.021 1byn:A, 8c5h:S, 5ccg:E, 5ccg:F, 5ccg:K, 5cch:F, 5cci:E, 5cci:F, 3f05:A, 1k5w:A, 5kj7:E, 5kj7:F, 5kj7:K, 5kj8:E, 5kj8:F, 5kj8:K, 2lha:A, 6mti:1, 6mti:2, 6mti:3, 6mti:4, 6mti:5, 6mti:6, 1tjx:A, 7tx9:A, 7u4q:A, 1uov:A, 1uow:A, 4v11:A, 5vfe:A, 5vfe:B, 5vff:A, 5vfg:A, 5w5c:F, 2yoa:A, 2yoa:B
12 5ixc:A 684 79 0.2072 0.0336 0.2911 0.081 5ixc:B, 5izr:A, 5izr:B, 5izr:D
13 5izr:C 659 75 0.2072 0.0349 0.3067 0.12
14 6h4d:A 274 42 0.1351 0.0547 0.3571 2.2
15 3b7y:A 144 65 0.1802 0.1389 0.3077 6.8
16 4ihb:E 126 51 0.1532 0.1349 0.3333 8.1 7jof:A, 7jof:B, 7jof:C, 7jof:D
17 6ei9:A 306 86 0.1712 0.0621 0.2209 8.6 6ei9:B
18 1ozv:B 441 44 0.1261 0.0317 0.3182 9.3 2h21:A, 2h21:B, 2h21:C, 2h23:A, 2h23:B, 2h23:C, 2h2e:A, 2h2e:B, 2h2e:C, 2h2j:A, 2h2j:B, 2h2j:C, 1mlv:A, 1mlv:B, 1mlv:C, 1ozv:A, 1ozv:C, 1p0y:A, 1p0y:B, 1p0y:C
19 7tf9:S 443 39 0.1441 0.0361 0.4103 9.7 7ten:A, 7ten:E, 7ten:B, 7ten:D, 7ten:H, 7ten:J, 7ten:M, 7ten:O, 7ten:Q, 7ten:S, 7ten:U, 7ten:W, 7tf9:H, 7tf9:A, 7tf9:Q, 7tf9:C, 7tf9:O, 7tf9:B, 7tf9:P, 7tf9:R, 7tf9:I, 7tf9:T, 7tf9:F, 7tf9:G, 7tf9:N, 7tfe:A, 7tfe:G, 7tfe:H, 7tfe:I, 7tfe:B, 7tfe:C, 7tfe:J, 7tfe:D, 7tfe:E, 7tfe:F, 7tfe:K, 7tfe:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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