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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMPYKLQESFLNTARKKRVKVSVYLVNGVRLQGRIRSFDLFTILLEDGKQQTLVYKHAITTIVPHERLEIE

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5sze:A 71 71 1.0000 1.0000 1.0000 4.62e-48
2 4y91:F 73 61 0.4930 0.4795 0.5738 4.45e-22 4y91:G, 4y91:H, 4y91:I, 4y91:J, 4y91:K, 4y91:L, 4y91:A, 4y91:B, 4y91:C, 4y91:D, 4y91:E
3 4v2s:A 71 60 0.5070 0.5070 0.6000 1.16e-20 7ogm:D, 4v2s:B, 4v2s:C, 4v2s:D, 4v2s:E, 4v2s:F, 2ylc:A
4 3m4g:F 71 61 0.5070 0.5070 0.5902 4.08e-20 8bvh:w, 8bvh:x, 8bvh:D, 8bvh:E, 8bvh:F, 8bvh:R, 8bvh:T, 8bvh:J, 8bvh:L, 8bvh:N, 8bvh:P, 8bvh:S, 8bvh:U, 8bvh:K, 8bvh:M, 8bvh:O, 8bvh:Q, 8bvj:R, 8bvj:L, 8bvj:N, 8bvj:P, 8bvj:X, 8bvj:Y, 8bvj:S, 8bvj:U, 8bvj:W, 8bvj:K, 8bvj:M, 8bvj:D, 8bvj:F, 8bvj:I, 8bvm:B, 8bvm:C, 8bvm:D, 8bvm:E, 8bvm:F, 8bvm:G, 8bvm:I, 8bvm:J, 8bvm:K, 8bvm:L, 8bvm:O, 3gib:A, 3gib:B, 3gib:C, 4ht8:A, 4ht8:B, 4ht8:E, 4ht8:F, 4ht8:C, 4ht8:D, 4ht9:A, 4ht9:B, 4ht9:C, 4j5y:A, 4j5y:F, 4j5y:B, 4j5y:C, 4j5y:D, 4j5y:E, 4j6w:A, 4j6w:E, 4j6w:B, 4j6w:C, 4j6w:F, 4j6w:D, 4j6x:A, 4j6x:B, 4j6x:C, 4j6x:D, 4j6x:E, 4j6x:F, 3m4g:A, 3m4g:C, 3m4g:E, 3m4g:G, 3m4g:I, 3m4g:K, 3m4g:L, 4mmk:A, 4mmk:E, 4mmk:K, 4mml:A, 5new:A, 5new:B, 6o1k:I, 6o1k:J, 6o1k:K, 6o1k:L, 6o1k:M, 6o1k:N, 6o1k:C, 6o1k:D, 6o1k:E, 6o1k:F, 6o1k:G, 6o1k:H, 6o1l:I, 6o1l:J, 6o1l:K, 6o1l:L, 6o1l:M, 6o1l:N, 6o1l:C, 6o1l:D, 6o1l:E, 6o1l:F, 6o1l:G, 6o1l:H, 6o1m:I, 6o1m:J, 6o1m:K, 6o1m:L, 6o1m:M, 6o1m:N, 6o1m:C, 6o1m:D, 6o1m:E, 6o1m:F, 6o1m:G, 6o1m:H, 7ogm:K, 7ogm:J, 7ogm:I, 7ogm:E, 7ogm:F, 4pno:A, 3qo3:A, 3qo3:B, 3qo3:C, 3qo3:D, 3qo3:E, 3qui:A, 3qui:F, 3qui:B, 3qui:C, 3qui:D, 3qui:E, 4qvc:D, 4qvd:D, 4qvd:E, 3rer:A, 3rer:B, 3rer:C, 3rer:D, 3rer:E, 3rer:F, 3res:B, 3res:C, 3res:E, 3res:F, 3res:H, 3res:I, 3res:J, 3res:K, 3res:L, 3res:G, 5uk7:C
5 3hsb:B 69 67 0.4225 0.4348 0.4478 8.16e-19 3ahu:A, 3ahu:B, 3ahu:C, 3hsb:A, 3hsb:C, 3hsb:D, 3hsb:F
6 4nl3:F 75 67 0.4507 0.4267 0.4776 3.12e-16 4nl3:D, 4nl3:A, 4nl3:B, 4nl3:J, 4nl3:G, 4nl3:H, 4nl3:C, 4nl3:E, 4nl3:I, 4nl3:K, 4nl3:L
7 1kq2:H 62 56 0.2535 0.2903 0.3214 6.98e-08 1kq2:A, 1kq2:B, 1kq2:I, 1kq2:K, 1kq2:M, 3qsu:A, 3qsu:B, 3qsu:H, 3qsu:C, 3qsu:E, 3qsu:F, 3qsu:D, 3qsu:S
8 5dy9:E 60 43 0.2254 0.2667 0.3721 0.001 5dy9:A, 5dy9:F, 5dy9:D, 5dy9:G, 5dy9:L, 4x9d:A, 4x9d:F, 4x9d:B, 4x9d:C, 4x9d:D, 4x9d:E
9 3jb9:H 76 45 0.2394 0.2237 0.3778 0.063 3jb9:m
10 5mkn:d 72 33 0.1690 0.1667 0.3636 0.33 5mki:C, 5mki:D, 5mki:E, 5mki:F, 5mki:G, 5mki:I, 5mki:J, 5mki:K, 5mki:L, 5mkn:A, 5mkn:G, 5mkn:B, 5mkn:C, 5mkn:D, 5mkn:E, 5mkn:F, 5mkn:H, 5mkn:I, 5mkn:J, 5mkn:K, 5mkn:L, 5mkn:M, 5mkn:N, 5mkn:O, 5mkn:P, 5mkn:Q, 5mkn:R, 5mkn:T, 5mkn:U, 5mkn:V, 5mkn:W, 5mkn:X, 5mkn:Y, 5mkn:Z, 5mkn:a, 5mkn:b
11 7obe:A 480 41 0.1690 0.0250 0.2927 2.5 7obe:B
12 8t2g:A 333 38 0.2254 0.0480 0.4211 6.3 8t2g:B, 8uzd:A, 8uzd:B
13 1x0x:A 350 44 0.1972 0.0400 0.3182 6.6 6e8y:A, 6e8z:A, 6e8z:B, 6e90:A, 6e90:B, 6e90:C, 6e90:D, 6pyp:A, 6pyp:B, 1wpq:A, 1wpq:B, 1x0v:A, 1x0v:B
14 8dk3:A 455 38 0.1408 0.0220 0.2632 7.1 8dk3:B
15 6v4x:G 77 28 0.1690 0.1558 0.4286 7.2 7a5p:k, 7a5p:g, 7abg:k, 7abi:k, 6ah0:n, 6ahd:S, 6ahd:f, 6ahd:n, 7b0y:h, 8c6j:r, 8c6j:g, 8ch6:m, 8ch6:9, 7dvq:g, 7dvq:n, 7evo:d, 9fmd:n, 9fmd:g, 8h6e:5f, 8h6e:4f, 8h6e:2f, 8h6j:5f, 8h6j:4f, 8h6j:2f, 8h6k:5f, 8h6k:4f, 8h6k:2f, 8h6l:5f, 8h6l:4f, 8h6l:2f, 8hk1:d, 8i0p:k, 8i0r:k, 8i0s:f, 8i0s:k, 8i0t:k, 8i0u:f, 8i0u:k, 8i0v:k, 8i0w:n, 6icz:g, 6id0:g, 6id1:g, 5mqf:k, 5mqf:d, 5o9z:k, 4pjo:G, 4pjo:g, 4pjo:U, 4pjo:u, 8q7q:g, 8q7v:g, 8q7w:g, 8q7x:g, 8q91:n, 6qdv:r, 6qdv:g, 8qo9:2g, 8qo9:4g, 7qtt:m, 6qw6:4g, 6qw6:5g, 6qx9:1g, 6qx9:5g, 6qx9:2g, 6qx9:4g, 8qxd:2g, 8qxd:4g, 8qxd:5g, 8qzs:5g, 8qzs:2g, 8qzs:4g, 8r08:1g, 8r08:2g, 8r08:4g, 8r08:5g, 8r09:2g, 8r09:5g, 8r09:4g, 8r0a:5g, 8r0a:2g, 8r0a:4g, 8r0b:2g, 8r0b:4g, 8r0b:5g, 8rc0:n, 8rm5:2g, 8rm5:5g, 8rm5:4g, 8ro2:g, 7vpx:d, 7vpx:n, 7w59:g, 7w59:n, 7w5a:g, 7w5a:n, 7w5b:g, 7w5b:n, 4wzj:G, 4wzj:N, 4wzj:U, 4wzj:GG, 4wzj:NN, 4wzj:UU, 4wzj:GGG, 4wzj:NNN, 4wzj:UUU, 4wzj:GGGG, 4wzj:NNNN, 4wzj:UUUU, 5xjc:g, 5xjc:n, 6y53:k, 6y5q:k, 8y6o:g, 8y6o:n, 8y6o:u, 8y7e:n, 5yzg:g, 5yzg:n, 5z56:g, 5z56:n, 5z57:g, 5z57:n, 5z58:g, 5z58:n

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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