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BioLiP
>protein
HMPVGWQCPGCTFINKPTRPGCEMCCRARPETYQIPASYQPDEEERARLAGEEEALRQY

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8im5:A 66 57 0.9661 0.8636 1.0000 1.67e-37 3b0a:E
2 7yui:B 232 56 0.9153 0.2328 0.9643 5.44e-35 3b08:K, 3b08:B, 3b08:E, 3b08:H, 3b0a:B
3 2crc:A 52 40 0.6271 0.7115 0.9250 8.45e-24
4 3a9j:C 32 25 0.2034 0.3750 0.4800 0.004 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
5 1nj3:A 31 20 0.1864 0.3548 0.5500 0.032 1q5w:A
6 2k1p:A 33 20 0.1525 0.2727 0.4500 0.85
7 7odf:A 703 20 0.1525 0.0128 0.4500 1.1
8 7dve:A 498 19 0.1695 0.0201 0.5263 2.1
9 7qbu:A 418 38 0.2373 0.0335 0.3684 2.9 7qbs:A, 7qbt:A, 7qbt:B, 7qbt:C, 7qbt:D, 7qbu:B, 7qbv:A, 7qbv:B, 7qbv:C, 7qbv:D
10 7mo1:B 34 27 0.1695 0.2941 0.3704 3.2
11 2cr8:A 53 29 0.1695 0.1887 0.3448 4.6
12 7ooc:A 249 21 0.1525 0.0361 0.4286 6.1 7p6z:A, 7pah:A, 7pai:A, 7paj:A, 7pak:A, 7pal:A, 7pam:A, 7pan:A, 7pao:A, 7paq:A, 7par:A, 7pas:A, 7ph9:A, 7pha:A, 7phb:A, 7phc:A, 7pi8:A, 7pi9:A, 7pia:A, 7pib:A, 7pic:A, 7pio:A, 7pip:A, 7piq:A, 7pir:A, 7pis:A, 7pit:A
13 4ipi:A 351 22 0.1186 0.0199 0.3182 6.7 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A
14 2b9e:A 275 15 0.1695 0.0364 0.6667 7.7
15 7mo3:B 38 29 0.2034 0.3158 0.4138 8.1 7mo3:D, 7mo4:B, 7mo4:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417