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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMPPIRRVNASQGSDAAYQILQEDGCVIVEQVICPNIIAKISDDVNRVMDKATIGAKKGEQTHIINMHNRTIHMGDLVLT
SKTYRDELLNLPFAHEVLEKVFKKDSGDYWLNMGNILNMLPGAEAQRPHRDDYLYPVSQHMDPATSPDLMINITFPLNEF
RHDNGGTLLLPKSHTGPNADFYANAEDLPAAEMQVGDALIFTGKCVHGGGANRSDKPRIGLALAAQPGYLTPRESNVNVP
RDIVETMTPLAQRMIGWGTVRTKDTYGLNMLQDKDFHEALGLKSKT

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zm3:B 286 285 0.9965 0.9965 1.0000 0.0 7wpy:A, 7wpy:B, 7wpy:C, 7wpy:D, 5zm3:A, 5zm3:C, 5zm3:D, 5zm4:A, 5zm4:B, 5zm4:C, 5zm4:D
2 7vbq:A 276 282 0.3846 0.3986 0.3901 1.68e-65
3 5m0t:A 287 288 0.3636 0.3624 0.3611 1.12e-54 5m0t:B
4 7eyr:C 279 264 0.3392 0.3477 0.3674 1.08e-52 7eyr:A, 7eyr:B, 7eyr:D, 7eys:C, 7eyt:C, 7eyt:A, 7eyt:B, 7eyt:D, 7eyu:B, 7eyu:A, 7eyw:C, 7eyw:A, 7eyw:B, 7eyw:D, 7fcb:C
5 7vbq:B 271 289 0.3287 0.3469 0.3253 9.14e-46
6 5ybn:A 296 297 0.3462 0.3345 0.3333 2.78e-41 5ybn:B, 5ybo:A, 5ybo:B, 5ybp:A, 5ybp:B, 5ybq:A, 5ybq:B, 5ybr:A, 5ybr:B, 5ybs:A, 5ybs:B, 5ybt:A, 5ybt:B
7 7etl:A 294 287 0.3147 0.3061 0.3136 2.36e-39 7de0:B, 7de0:A, 7de0:C, 7de0:D, 7etk:A, 7etk:B, 7etl:B, 6oxh:A, 6oxh:B, 6oxj:A, 6oxj:B, 7wsb:A, 7wsb:B, 7wsb:C, 7wsb:D, 7wsb:E, 7wsb:F, 4y5s:A, 4y5s:B, 4y5t:A, 4y5t:B
8 5ybl:B 273 285 0.3182 0.3333 0.3193 1.35e-36 5ybl:A, 5ybl:C, 5ybl:D
9 5dap:A 288 287 0.2937 0.2917 0.2927 3.25e-35 5daq:A, 5dav:A, 5daw:A, 5dax:A, 6eoz:A, 6jzm:B, 6k0e:B, 6k0f:B, 6k30:B, 6kd9:B, 6kd9:F, 5oa4:A, 5oa7:A, 5oa8:A, 7olk:A, 7oll:A, 7olm:A, 7olo:A, 7olp:A, 7olq:A, 7olr:A, 7olt:A, 5y7r:B, 5y7t:B
10 4nao:A 282 274 0.2937 0.2979 0.3066 1.93e-33
11 6s0v:B 284 226 0.1993 0.2007 0.2522 5.67e-05 7cl3:A, 7cl3:B, 7cl3:C, 7cl3:D, 7cl3:E, 7cl3:F, 7cl5:A, 7cl5:B, 7cl5:C, 7cl5:D, 7cl5:E, 7cl5:F, 7cl6:A, 7cl6:B, 7cl6:C, 7cl6:D, 7cl6:E, 7cl6:F, 6s0s:A, 6s0s:B, 6s0s:C, 6s0s:D, 6s0s:E, 6s0s:F, 6s0u:A, 6s0u:B, 6s0u:C, 6s0u:D, 6s0u:E, 6s0u:F, 6s0v:A, 6s0v:C, 6s0v:D, 6s0v:E, 6s0v:F, 6s0w:A, 6s0w:B, 6s0w:C, 6s0w:D, 6s0w:E, 6s0w:F
12 5erl:D 258 104 0.0874 0.0969 0.2404 0.051 5ep9:A, 5ep9:B, 5ep9:C, 5ep9:D, 5equ:A, 5equ:B, 5equ:C, 5equ:D, 5erl:A, 5erl:B, 5erl:C
13 2a1x:A 253 89 0.0734 0.0830 0.2360 0.15
14 8xho:A 262 61 0.0699 0.0763 0.3279 0.58 8xho:B
15 7ay1:D 341 88 0.0979 0.0821 0.3182 0.80 8a9j:D, 7ay2:B, 7zh3:D
16 9fcj:D 312 88 0.0979 0.0897 0.3182 0.94 7ay0:B, 9fci:D
17 8a9k:D 285 89 0.0979 0.0982 0.3146 1.0 7ay0:D, 7zh4:D
18 7qbz:A 638 112 0.0874 0.0392 0.2232 2.8 7qc0:A
19 7ay2:E 203 82 0.0804 0.1133 0.2805 3.2
20 3v8d:A 479 64 0.0664 0.0397 0.2969 7.3 3dax:A, 3dax:B, 3sn5:A, 3sn5:B, 3v8d:B
21 2qen:A 350 48 0.0524 0.0429 0.3125 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218