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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR
PTRLNVIRNDNDSWDYTKPYL

The query sequence (length=101) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7evs:A 101 101 1.0000 1.0000 1.0000 9.01e-73 7evs:B
2 2mqp:A 118 101 0.7228 0.6186 0.7228 6.06e-54 7evr:A, 7evr:C
3 2adb:A 127 98 0.4059 0.3228 0.4184 1.82e-23 3zzy:A, 3zzy:B, 3zzz:A, 3zzz:B
4 2adc:A 208 98 0.2673 0.1298 0.2755 0.015
5 4qqb:A 169 37 0.1584 0.0947 0.4324 0.56 1b7f:A, 1b7f:B, 4qqb:B
6 6hip:A 104 45 0.1782 0.1731 0.4000 1.1 6hip:B, 5lso:A, 5lso:B, 2peh:A, 2peh:B
7 1rk8:A 87 32 0.1485 0.1724 0.4688 2.0
8 4oth:A 306 45 0.1485 0.0490 0.3333 2.3 4oti:A
9 4otg:A 324 45 0.1485 0.0463 0.3333 2.3
10 8gix:E 991 23 0.1089 0.0111 0.4783 2.9
11 6bja:A 382 31 0.1089 0.0288 0.3548 4.5
12 6m75:A 167 62 0.2079 0.1257 0.3387 4.6
13 4ttv:A 403 34 0.0891 0.0223 0.2647 6.5 4hwt:A, 4hwt:B, 4p3n:A, 4p3n:B, 4p3n:C, 4p3n:D, 4ttv:B, 4ttv:C, 4ttv:D
14 4ald:A 363 41 0.1584 0.0441 0.3902 7.1 6ald:A, 6ald:B, 3dft:A, 3dft:B, 3dft:C, 3dft:D, 3lge:A, 3lge:B, 3lge:C, 3lge:D, 2ot0:A, 2ot0:B, 2ot0:C, 2ot0:D, 2ot1:A, 2ot1:B, 2ot1:C, 2ot1:D, 2quv:A, 2quv:B, 2quv:D, 5tle:A, 5tle:B, 5tle:C, 5tle:D, 5tlh:A, 5tlh:B, 5tlh:C, 5tlh:D, 5tlw:A, 5tlw:B, 5tlw:C, 5tlw:D, 5tlz:A, 5tlz:B, 5tlz:C, 5tlz:D, 3tu9:A, 3tu9:B, 3tu9:C, 3tu9:D, 6xmh:A, 6xmh:B, 6xml:A, 6xml:B, 6xmm:A, 6xmm:B, 6xmo:A, 6xmo:B, 1zai:A, 1zai:B, 1zai:C, 1zai:D, 1zaj:A, 1zaj:B, 1zaj:C, 1zaj:D, 1zal:A, 1zal:B, 1zal:C, 1zal:D
15 5lpa:A 267 45 0.1287 0.0487 0.2889 7.4 6fzb:A, 6fzb:B, 5g4a:A, 5g4a:B, 5lpa:B, 5luh:A, 5luh:B
16 8gbj:D 308 25 0.1089 0.0357 0.4400 8.4 8faz:D, 8ouy:C, 8ouz:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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