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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMLIRKLFKFENAHVVRKRSIHGHSYKVELLLKASKLDHGQMVYDFGLLKGVIKDLFDSFDHAICFWEKDDPQYIDACKT
FSARWISLPVSPSAEQFSRIFFYLAQQVLDVEVYSVIVHETDTGYAQSFLEDIQNEQMGLLNLEGIIFSEQVQSEWADPN
MYENLKQGI

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v0f:A 182 178 1.0000 0.9286 0.9494 1.98e-121 7v0f:B
2 2oba:B 121 107 0.1598 0.2231 0.2523 6.10e-06 2oba:A, 2oba:C, 2oba:D, 2oba:E, 2oba:F
3 4ntk:A 121 103 0.1657 0.2314 0.2718 5.30e-04 4ntk:E, 4ntk:B, 4ntk:C, 4ntk:D, 4ntk:F, 4ntm:A, 4ntm:E, 4ntm:B, 4ntm:C, 4ntm:D, 4ntm:F, 4ntn:A, 4ntn:B, 4ntn:C, 4ntn:D, 4ntn:E, 4ntn:F, 3qn0:A, 3qn0:B, 3qn0:C, 3qn0:D, 3qn0:E, 3qn0:F, 3qn9:A, 3qn9:B, 3qna:A, 3qna:B, 3qna:C, 3qna:D, 3qna:E, 3qna:F
4 1y13:A 163 59 0.1124 0.1166 0.3220 0.003 1y13:C, 1y13:B
5 2a0s:A 163 60 0.1124 0.1166 0.3167 0.005 2a0s:B, 3lx3:A, 3lze:A, 3m0n:A
6 7b1s:B 466 52 0.0828 0.0300 0.2692 0.95 7b1s:E, 7b2c:B, 7b2c:E
7 2vug:A 373 59 0.0947 0.0429 0.2712 1.3 2vug:B
8 2g64:A 140 41 0.0828 0.1000 0.3415 1.8
9 6g1y:B 493 33 0.0888 0.0304 0.4545 2.6 6g1y:A, 6g1z:A, 6g1z:B, 6g20:A, 6g20:B
10 8gf5:C 429 53 0.0828 0.0326 0.2642 3.5
11 1e6y:E 433 51 0.0769 0.0300 0.2549 8.6 1e6y:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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