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BioLiP
>protein
HMKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEK
TRELKEVLNKVKY

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2q5z:B 94 92 0.9892 0.9787 1.0000 5.30e-63 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
2 7mu5:A 110 78 0.2688 0.2273 0.3205 3.37e-04 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
3 6sqw:A 114 78 0.2581 0.2105 0.3077 0.002 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
4 4qgp:A 108 50 0.1935 0.1667 0.3600 0.13 4qgp:B
5 7ody:C 100 92 0.2796 0.2600 0.2826 0.17 7ody:A, 7ody:B, 7ody:D
6 5ie9:C 95 96 0.3011 0.2947 0.2917 0.21 5ie9:A, 5ie9:B, 5ie9:D
7 4cg4:C 376 36 0.1398 0.0346 0.3611 0.36 4cg4:D, 4cg4:E, 4cg4:F
8 4po6:A 475 67 0.2151 0.0421 0.2985 0.93
9 7cdw:A 683 53 0.2258 0.0307 0.3962 1.1 7cdw:B
10 4y9d:A 235 25 0.1290 0.0511 0.4800 5.8
11 2ivn:A 325 72 0.2366 0.0677 0.3056 6.3 2ivo:A, 2ivo:B, 2ivo:C, 2ivp:A
12 4v4n:AZ 99 56 0.1935 0.1818 0.3214 7.7 4v6u:BZ
13 1ky8:A 499 24 0.1183 0.0220 0.4583 8.0 1uxn:A, 1uxp:A, 1uxq:A, 1uxr:A, 1uxt:A, 1uxu:A, 1uxv:A
14 7ulz:A 521 60 0.2151 0.0384 0.3333 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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