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BioLiP
>protein
HMHKKYFIGTSILIAVFVVIFDQVTKYIIATTMKIGDSFEVIPHFLNITSHRNNGAAWGILSGKMTFFFIITIIILIALV
YFFIKDAQYNLFMQVAISLLFAGALGNFIDRVLTGEVVDFIDTNIFGYDFPIFNIADSSLTIGVILIIIALLKDT

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ryp:A 164 155 1.0000 0.9451 1.0000 1.63e-107 6ryo:A
2 5dir:A 157 143 0.3032 0.2994 0.3287 2.93e-18 5dir:C, 5dir:D, 5dir:B, 6fms:A, 6fms:B, 6fms:C, 6fms:D
3 2zzr:A 397 48 0.0968 0.0378 0.3125 0.40
4 7wr3:A 794 43 0.1097 0.0214 0.3953 4.3 7wr3:B, 7wr5:A
5 8iwo:A 956 53 0.1032 0.0167 0.3019 5.4 8iwo:B, 8j2m:A, 8j2m:B
6 4o2d:B 515 41 0.0774 0.0233 0.2927 8.8
7 4o2d:A 580 41 0.0774 0.0207 0.2927 8.9 4rmf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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