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BioLiP
>protein
HMEQRILKFTTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2acj:A 53 53 1.0000 1.0000 1.0000 5.03e-34 5zuo:A, 5zup:A
2 3f21:A 67 60 0.9623 0.7612 0.8500 5.71e-29 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
3 5zu1:D 47 52 0.8491 0.9574 0.8654 8.19e-25
4 7c0i:B 67 39 0.4340 0.3433 0.5897 1.47e-09 7c0i:A, 7c0i:C
5 1sfu:A 70 41 0.3208 0.2429 0.4146 1.27e-04 1sfu:B
6 7c0j:B 62 30 0.3396 0.2903 0.6000 2.77e-04 7c0j:A
7 4kmf:A 62 57 0.2830 0.2419 0.2632 0.001
8 2heo:A 59 59 0.3396 0.3051 0.3051 0.033 2heo:D, 1j75:A
9 4ev0:D 214 33 0.2264 0.0561 0.3636 0.098 4ev0:A
10 4lb5:B 63 59 0.3208 0.2698 0.2881 0.17 4lb5:A, 4lb6:B
11 6zj3:LT 190 26 0.2264 0.0632 0.4615 1.6
12 3qph:A 335 40 0.2264 0.0358 0.3000 1.8 2f5t:X
13 3out:B 264 48 0.2830 0.0568 0.3125 3.1 3out:A, 3out:C
14 6agi:B 322 42 0.2642 0.0435 0.3333 5.3 6agi:A
15 1pjq:B 455 27 0.2075 0.0242 0.4074 5.7 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B
16 5hgc:A 373 23 0.1698 0.0241 0.3913 6.3
17 6wbf:A 344 18 0.1509 0.0233 0.4444 6.9 7f8j:A, 7f8j:G, 7f8j:B, 7f8j:C, 7f8j:D, 7f8j:E, 7f8j:F, 7f8n:A, 7f8n:B, 7f8n:C, 7f8n:D, 7f8n:E, 7f8n:F, 7f8n:G, 7f8o:A, 7f8o:B, 7f8o:C, 7f8o:D, 7f8o:E, 7f8o:F, 7f8o:G, 8gyo:A, 8gyo:B, 8gyo:D, 8gyo:E, 8gyo:F, 6wbf:B, 6wbf:C, 6wbf:D, 6wbf:E, 6wbf:F, 6wbf:G, 6wbg:A, 6wbg:B, 6wbg:C, 6wbg:D, 6wbg:E, 6wbg:F, 6wbg:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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