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BioLiP
>protein
HMEQRIATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2acj:A 53 53 0.9804 0.9434 0.9434 1.31e-29 5zuo:A, 5zup:A
2 3f21:A 67 45 0.8824 0.6716 1.0000 2.86e-27 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
3 5zu1:D 47 50 0.8235 0.8936 0.8400 9.25e-23
4 7c0i:B 67 39 0.4510 0.3433 0.5897 1.18e-09 7c0i:A, 7c0i:C
5 7c0j:B 62 30 0.3529 0.2903 0.6000 2.48e-04 7c0j:A
6 1sfu:A 70 40 0.3333 0.2429 0.4250 4.37e-04 1sfu:B
7 4kmf:A 62 48 0.2353 0.1935 0.2500 0.025
8 2heo:A 59 59 0.3529 0.3051 0.3051 0.030 2heo:D, 1j75:A
9 4ev0:D 214 33 0.2353 0.0561 0.3636 0.097 4ev0:A
10 4lb5:B 63 45 0.2745 0.2222 0.3111 0.20 4lb5:A, 4lb6:B
11 3qph:A 335 40 0.2353 0.0358 0.3000 1.4 2f5t:X
12 6zj3:LT 190 26 0.2353 0.0632 0.4615 1.5
13 5zyr:A 306 36 0.2157 0.0359 0.3056 5.5 5zc2:B, 5zc2:A, 5zyr:B
14 3op4:A 247 20 0.1961 0.0405 0.5000 5.9 4i08:A, 4i08:B, 3op4:B, 3rsh:A, 3rsh:B, 4wk6:A, 4wk6:B, 4wk6:C, 4wk6:D
15 1pjq:B 455 17 0.1765 0.0198 0.5294 6.1 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B
16 3tzc:A 224 20 0.1961 0.0446 0.5000 6.2
17 6wbf:A 344 18 0.1569 0.0233 0.4444 6.3 7f8j:A, 7f8j:G, 7f8j:B, 7f8j:C, 7f8j:D, 7f8j:E, 7f8j:F, 7f8n:A, 7f8n:B, 7f8n:C, 7f8n:D, 7f8n:E, 7f8n:F, 7f8n:G, 7f8o:A, 7f8o:B, 7f8o:C, 7f8o:D, 7f8o:E, 7f8o:F, 7f8o:G, 8gyo:A, 8gyo:B, 8gyo:D, 8gyo:E, 8gyo:F, 6wbf:B, 6wbf:C, 6wbf:D, 6wbf:E, 6wbf:F, 6wbf:G, 6wbg:A, 6wbg:B, 6wbg:C, 6wbg:D, 6wbg:E, 6wbg:F, 6wbg:G
18 7sxo:F 549 41 0.2941 0.0273 0.3659 6.8 7sxo:A, 7sxo:E, 7sxo:B, 7sxo:C, 7sxo:D
19 6agi:B 322 19 0.1961 0.0311 0.5263 8.5 6agi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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