Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMELQDVVVKGPDEKLQLAVFVQNETKPCYSVSYNGKTMLEKSPLGMNTNIGDFTKNLKLTGHSVDKIDTVYQQTRIKVS
NVHYRANELTCHLENEQGQKLGVIFRVSDNDVAFRYTLPHQGGKASVTVKEEQTGFRFPEQTTTFLCPQSDAMIGWKRTK
PSYEEEYKADAPMSDRSQYGHGYTFPCLFRIGNDGWVLVSETGVDSRYCGSRLSDVSEGNLYTVAFPMAEENNGNGTVAP
AFALPGATPWRTITVGDHLKPIVETTVPWDVVSPLYETKHDYRFGRGTWSWILWQDGSINYDDQVRYIDFASAMGYEYAL
IDNWWDTRIGHQRMKSLVEYARDKGVELFLWYSSSGYWNDIEQGPVNRMDNAIIRKREMKWLQSLGVKGIKVDFFGGDKQ
ETMRLYEDILSDADDHGLMVIFHGCTLPRGWERMYPNYVGSEAVLASENMVFNQHFCDEEAFNTCLHPFIRNTVGSMEFG
GCLLNKRLNRNNDGGTTRRTTDVFQLATTVLLQNPVQNFALAPNNLKDVPAVCMDFMKRVPTTWDETRFVDGYPGKYVVL
ARRQGDTWYLAAVNAGKEPLKLKLDLEMFAGKTVALYKDDKKGEPELTSLKVKENGKVQLEIRPQGGILCIK

The query sequence (length=632) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xfm:A 632 632 1.0000 1.0000 1.0000 0.0 5xfm:B, 5xfm:C, 5xfm:D
2 5e1q:B 644 677 0.2658 0.2609 0.2482 3.53e-42 3a24:A, 3a24:B, 5e1q:A
3 8wg1:D 685 664 0.2563 0.2365 0.2440 2.32e-38 8wg0:A, 8wg0:B, 8wg0:C, 8wg0:D, 8wg1:A, 8wg1:B, 8wg1:C, 8wg2:A, 8wg2:B, 8wg2:C, 8wg2:D
4 2d73:A 717 718 0.2563 0.2259 0.2256 1.07e-31 2d73:B, 2jka:A, 2jka:B, 2jke:A, 2jke:B, 2jkp:A, 2jkp:B, 3wfa:A, 3wfa:B, 2zq0:A, 2zq0:B
5 5hq4:A 662 693 0.2642 0.2523 0.2410 7.72e-27 5hqa:A, 5hqb:A, 5hqc:A
6 4n09:A 345 134 0.0538 0.0986 0.2537 1.8 4n09:B, 4n09:C, 4n09:D, 3otx:A, 3otx:B, 2xtb:A
7 3i3w:A 441 47 0.0222 0.0317 0.2979 2.9 3i3w:B
8 7r0f:A 401 33 0.0237 0.0374 0.4545 3.3 4d02:A, 6etb:A, 6etb:B, 5lld:A, 5lmc:A, 7r0f:B, 7r1h:A, 7r1h:B, 7r1j:A, 7r1j:B, 7r2o:A, 7r2o:B, 7r2p:A, 7r2p:B, 7r2r:A, 7r2r:B, 7r2s:A, 7r2s:B
9 3ahr:A 362 61 0.0285 0.0497 0.2951 5.0 3ahq:A
10 1m0w:A 481 54 0.0253 0.0333 0.2963 5.8 1m0w:B
11 1uas:A 362 126 0.0459 0.0801 0.2302 9.0

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218