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BioLiP
>protein
HMASPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIY

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3eyi:B 67 67 1.0000 1.0000 1.0000 1.54e-46 3eyi:A, 4ka4:A, 4ka4:E, 4ka4:B, 4ka4:D
2 4kmf:A 62 56 0.2985 0.3226 0.3571 9.66e-05
3 4wcg:B 61 60 0.2687 0.2951 0.3000 0.081 4wcg:A
4 6wvj:C 1117 26 0.1791 0.0107 0.4615 0.12
5 7f75:C 1133 26 0.1791 0.0106 0.4615 0.12
6 7ckq:C 1061 26 0.1791 0.0113 0.4615 0.13
7 7zhf:A 250 53 0.2090 0.0560 0.2642 0.86 7zhk:A, 7zhk:B, 7zhk:C
8 3zqc:J 119 39 0.1940 0.1092 0.3333 2.7 3zqc:A, 3zqc:D, 3zqc:G
9 5xw2:A 375 22 0.1194 0.0213 0.3636 2.9 4e2p:A
10 3w5j:A 194 57 0.2687 0.0928 0.3158 4.5
11 2ev9:B 263 27 0.1493 0.0380 0.3704 4.9 2cy0:A, 2d5c:A, 2d5c:B, 2ev9:A
12 1h88:C 152 59 0.1940 0.0855 0.2203 6.4 1h89:C, 1h8a:C, 1mse:C, 1msf:C
13 6wmp:C 1196 60 0.2985 0.0167 0.3333 7.8 6wmr:C, 6wmt:C
14 8t6s:A 962 22 0.1493 0.0104 0.4545 8.9
15 4cmq:B 1168 22 0.1493 0.0086 0.4545 9.3 4cmp:B, 4cmq:A
16 8t78:A 863 22 0.1493 0.0116 0.4545 9.3
17 7s4u:A 1092 22 0.1493 0.0092 0.4545 9.4
18 7s37:P 1033 22 0.1493 0.0097 0.4545 9.4 7s3h:P
19 7s4v:A 1122 22 0.1493 0.0089 0.4545 9.6 6o0x:A, 8t6p:A
20 4zt9:C 1160 22 0.1493 0.0086 0.4545 9.7
21 8t76:A 1088 22 0.1493 0.0092 0.4545 9.7
22 8t6y:A 1148 22 0.1493 0.0087 0.4545 9.7 8t6o:A, 8t79:A
23 7z4d:E 1166 22 0.1493 0.0086 0.4545 9.7
24 6o0z:A 1288 22 0.1493 0.0078 0.4545 9.8
25 8t77:A 1025 22 0.1493 0.0098 0.4545 9.8
26 7z4g:B 1188 22 0.1493 0.0084 0.4545 9.8 7zo1:B
27 8t6t:A 1168 22 0.1493 0.0086 0.4545 9.9 8t7s:G
28 7z4d:B 1259 22 0.1493 0.0079 0.4545 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417