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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HMASKPVWGDVNCDGDVNVADVVLLNKWLNNNADYAMTDQGKVNADCFNPQDANGGAVDASKVDLTKTDSDAIIKSVVHL
ITLPAKG

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5n5p:B 87 87 1.0000 1.0000 1.0000 1.07e-58 5n5p:D
2 5m2o:B 74 38 0.2184 0.2568 0.5000 2.65e-08
3 5m2s:B 79 83 0.3103 0.3418 0.3253 1.47e-05
4 1daq:A 71 43 0.1839 0.2254 0.3721 0.087 1dav:A, 2mte:A
5 5lxv:B 65 25 0.1264 0.1692 0.4400 0.10 5lxv:D
6 6kg9:A 67 27 0.1379 0.1791 0.4444 0.13 6kgc:B, 6kgd:B, 6kge:D, 6kge:B, 6kgf:D, 6kgf:B
7 2y7i:A 228 30 0.1379 0.0526 0.4000 0.15 2y7i:B
8 4dh2:B 72 44 0.2299 0.2778 0.4545 0.18 4dh2:D
9 4fl4:A 68 40 0.1609 0.2059 0.3500 0.27 4fl4:D, 4fl4:G, 4fl4:J
10 4fl4:A 68 21 0.1264 0.1618 0.5238 0.51 4fl4:D, 4fl4:G, 4fl4:J
11 8ro0:N 142 63 0.2069 0.1268 0.2857 0.73 8ro1:N
12 8bqa:AAA 298 78 0.2759 0.0805 0.3077 0.95
13 2ccl:B 62 49 0.1954 0.2742 0.3469 1.4 2ccl:D, 1ohz:B
14 2ccl:B 62 21 0.1149 0.1613 0.4762 2.2 2ccl:D, 1ohz:B
15 2y3n:B 60 39 0.1609 0.2333 0.3590 1.5
16 2y3n:D 49 17 0.1149 0.2041 0.5882 4.8
17 4uyp:B 73 51 0.1724 0.2055 0.2941 6.9 4uyp:D, 4uyq:B
18 8b6h:DB 604 50 0.1724 0.0248 0.3000 7.9 8b6h:Db, 8bqs:DB, 8bqs:Db, 8gym:c2, 8gym:C2, 8gzu:27, 8gzu:82, 8gzu:c2, 8gzu:C2, 7w5z:C2, 7w5z:c2
19 2vn6:B 64 20 0.1149 0.1562 0.5000 8.3 2vn5:B, 2vn5:D
20 2vn6:B 64 40 0.1839 0.2500 0.4000 9.5 2vn5:B, 2vn5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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